SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52380 | AT | Annotation by Michelle Graham. TAIR10: NUP50 (Nucleoporin 50 kDa) protein | chr1:19509979-19511301 FORWARD LENGTH=440 | SoyBase | E_val: 1.00E-112 | ISS |
| GO:0046907 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR23138 | Panther | RAN BINDING PROTEIN | JGI | ISS | |
| PTHR23138:SF52 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00638 | PFAM | RanBP1 domain | JGI | ISS | |
| PF08911 | PFAM | NUP50 (Nucleoporin 50 kDa) | JGI | ISS | |
| UniRef100_B9SQB9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ran-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SQB9_RICCO | SoyBase | E_val: 2.00E-146 | ISS |
| UniRef100_I1MCM4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCM4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g01660 not represented in the dataset |
Glyma15g01660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g43700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g013600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g01660.2 sequence type=transcript gene model=Glyma15g01660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTAACTCTTTATCTCTTCTTAACATCTTTTCTCCTCATTTTTAATCTATACATTCCTTTTTCTCGCCGATGTAACAGAATATCACACCAATTCGTGAAATCGAAGGATTCCGACAGAATCGTACGAATTATTGTTCATTGTTTGCCTCTACTGTTGTGCTCCAACTTGGTAAACTAGAAGTACAGATTTATTTCTTCAATGGGGGATGCTGAGAATGCCCTTCCACCTTCAAAGAAAAGGGCTGCTGGAAGGGAGCTCACTCGAGATACTCCCATTGATGATGAGGAAGATGCCCCTGAGCTTGAGACTGGCACTTTCAAGAGGGCCAGCCAAGAGGTTATGGGCACCAGAAGGATAGTCAAAGTTCGTCGCCAACCAACTAATTCTGCTCCTTCTGCAAATCCTTTTGCTGGAATACGCCTGGTTGCTCCCACTGAATCCAGTGCTAATCCTGCTGAGACTACTACTGAGGTAAAATCAGCTGGGGAAAACACCGTTGCAGATGAATCAAAAAGTAATGATACAGCTAAGGATTCTGAGAAAGCAGGAGATGGGGAAGCTAAGCAGCCTGAGAGCAAAACTAATGAGGCAGAGGATAAACTTACTGAAAGTAAGGATGCTGCTGAAGAAAGCAATGCAGACAAGGAGCATACTGCAGAAAAGGAAAGTACTGATGATGAATCGAAGGTAGATAAGGAACAAAATAAGGATGTCACTGAAAGTGGAAATGAGGATAAGAAGGATGCTACACACAACGAAAGTGCCAGCAAGTTAGATAAAGAGAAAACTGGGGATGGCAAGGATTCTGAAAACGATGATAAGAACGAGAACACTAACAATGTGGATAAGAAGGACAGCAAAGCTGAAAGTGCAGAGCCAAGTGCTGAAGGTGGCCATTTGAAGTCATTTCAACTGCTCTCAAGTAGCCAAAATGCCTTTACCGGTCTTGCTGGTACTGGATTTTCTAATTCCTCATTTTCCTTCGGTTCCATTTCAAATGAAGGGTCTGGTTCTATTTTTGGACTGAAAAGTGATAAGCCCTATGGTCTTGGTTTATCTAACAATGGAAGTTCTCTTTTGGGGGCATCTGGGGCCTCTGCTGTTTCTAAGAATGAGGGAAGTGGTTTGGCAATGCAGGAGGTTGTTGTTGAAACCGGGGAAGAAAATGAGGAAGTGGTTTTTAATGCAGACTCAGTGTTGTTTGAGTTTGCTGATGGAAGTTGGAAGGAACGTGGAAAGGGAGAACTGAAGGTTAATGTTTCCAGTGAAACCAAAAAAGCCAGACTTCTAATGAGGTCTAAGGGAAATTTTAGATTGATTTTGAATGCACGTCTCTACCCTGATATGAAGCTCACAAATATGGACAAGAAGGGTGTTACTTTTGCCTGCATCAATAGTGCCAGCGAAGGGAAAGGTGGTCTTTCAACATTTGCCTTGAAGTTCAAGGACGGCTCCATAGTGGAGGAGTTTAAAGCCACTGTCATGGAACACAAAGGTGAGACATCCACAGTTCTCAAGACCCCTGAAAATTCTCCAAAGGCTTCTGATGATTGAGAGACACTCCTTACTCATGTCTCACAATGTCTGTCTCGTTAGATGTTCCTTCACAAAGATAATTTGCTATTCCGAGTTCGTTTGCCCTTGTGTGGCATAGTCTATTATACTTAAATTAGTGTACTTGAATTTGAGTGAAGTCTCCAACTGATAATGGAACTTAATTTTGGATTTAGACTGCACAGTTTTAACGCTTGAACCCTGAAACGTTCAATAGGGCTGTTATTTCTTGAGCCTGGAATTTTGTCTAATTTCAAAATGACATTGAACTTTGCTATTGTGATGTTACCGTGACAAGATCACTTTTTAACTAAAACTACTTTATAT
>Glyma15g01660.1 sequence type=CDS gene model=Glyma15g01660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGATGCTGAGAATGCCCTTCCACCTTCAAAGAAAAGGGCTGCTGGAAGGGAGCTCACTCGAGATACTCCCATTGATGATGAGGAAGATGCCCCTGAGCTTGAGACTGGCACTTTCAAGAGGGCCAGCCAAGAGGTTATGGGCACCAGAAGGATAGTCAAAGTTCGTCGCCAACCAACTAATTCTGCTCCTTCTGCAAATCCTTTTGCTGGAATACGCCTGGTTGCTCCCACTGAATCCAGTGCTAATCCTGCTGAGACTACTACTGAGGTAAAATCAGCTGGGGAAAACACCGTTGCAGATGAATCAAAAAGTAATGATACAGCTAAGGATTCTGAGAAAGCAGGAGATGGGGAAGCTAAGCAGCCTGAGAGCAAAACTAATGAGGCAGAGGATAAACTTACTGAAAGTAAGGATGCTGCTGAAGAAAGCAATGCAGACAAGGAGCATACTGCAGAAAAGGAAAGTACTGATGATGAATCGAAGGTAGATAAGGAACAAAATAAGGATGTCACTGAAAGTGGAAATGAGGATAAGAAGGATGCTACACACAACGAAAGTGCCAGCAAGTTAGATAAAGAGAAAACTGGGGATGGCAAGGATTCTGAAAACGATGATAAGAACGAGAACACTAACAATGTGGATAAGAAGGACAGCAAAGCTGAAAGTGCAGAGCCAAGTGCTGAAGGTGGCCATTTGAAGTCATTTCAACTGCTCTCAAGTAGCCAAAATGCCTTTACCGGTCTTGCTGGTACTGGATTTTCTAATTCCTCATTTTCCTTCGGTTCCATTTCAAATGAAGGGTCTGGTTCTATTTTTGGACTGAAAAGTGATAAGCCCTATGGTCTTGGTTTATCTAACAATGGAAGTTCTCTTTTGGGGGCATCTGGGGCCTCTGCTGTTTCTAAGAATGAGGGAAGTGGTTTGGCAATGCAGGAGGTTGTTGTTGAAACCGGGGAAGAAAATGAGGAAGTGGTTTTTAATGCAGACTCAGTGTTGTTTGAGTTTGCTGATGGAAGTTGGAAGGAACGTGGAAAGGGAGAACTGAAGGTTAATGTTTCCAGTGAAACCAAAAAAGCCAGACTTCTAATGAGGTCTAAGGGAAATTTTAGATTGATTTTGAATGCACGTCTCTACCCTGATATGAAGCTCACAAATATGGACAAGAAGGGTGTTACTTTTGCCTGCATCAATAGTGCCAGCGAAGGGAAAGGTGGTCTTTCAACATTTGCCTTGAAGTTCAAGGACGGCTCCATAGTGGAGGAGTTTAAAGCCACTGTCATGGAACACAAAGGTGAGACATCCACAGTTCTCAAGACCCCTGAAAATTCTCCAAAGGCTTCTGATGATTGA >Glyma15g01660.2 sequence type=CDS gene model=Glyma15g01660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGATGCTGAGAATGCCCTTCCACCTTCAAAGAAAAGGGCTGCTGGAAGGGAGCTCACTCGAGATACTCCCATTGATGATGAGGAAGATGCCCCTGAGCTTGAGACTGGCACTTTCAAGAGGGCCAGCCAAGAGGTTATGGGCACCAGAAGGATAGTCAAAGTTCGTCGCCAACCAACTAATTCTGCTCCTTCTGCAAATCCTTTTGCTGGAATACGCCTGGTTGCTCCCACTGAATCCAGTGCTAATCCTGCTGAGACTACTACTGAGGTAAAATCAGCTGGGGAAAACACCGTTGCAGATGAATCAAAAAGTAATGATACAGCTAAGGATTCTGAGAAAGCAGGAGATGGGGAAGCTAAGCAGCCTGAGAGCAAAACTAATGAGGCAGAGGATAAACTTACTGAAAGTAAGGATGCTGCTGAAGAAAGCAATGCAGACAAGGAGCATACTGCAGAAAAGGAAAGTACTGATGATGAATCGAAGGTAGATAAGGAACAAAATAAGGATGTCACTGAAAGTGGAAATGAGGATAAGAAGGATGCTACACACAACGAAAGTGCCAGCAAGTTAGATAAAGAGAAAACTGGGGATGGCAAGGATTCTGAAAACGATGATAAGAACGAGAACACTAACAATGTGGATAAGAAGGACAGCAAAGCTGAAAGTGCAGAGCCAAGTGCTGAAGGTGGCCATTTGAAGTCATTTCAACTGCTCTCAAGTAGCCAAAATGCCTTTACCGGTCTTGCTGGTACTGGATTTTCTAATTCCTCATTTTCCTTCGGTTCCATTTCAAATGAAGGGTCTGGTTCTATTTTTGGACTGAAAAGTGATAAGCCCTATGGTCTTGGTTTATCTAACAATGGAAGTTCTCTTTTGGGGGCATCTGGGGCCTCTGCTGTTTCTAAGAATGAGGGAAGTGGTTTGGCAATGCAGGAGGTTGTTGTTGAAACCGGGGAAGAAAATGAGGAAGTGGTTTTTAATGCAGACTCAGTGTTGTTTGAGTTTGCTGATGGAAGTTGGAAGGAACGTGGAAAGGGAGAACTGAAGGTTAATGTTTCCAGTGAAACCAAAAAAGCCAGACTTCTAATGAGGTCTAAGGGAAATTTTAGATTGATTTTGAATGCACGTCTCTACCCTGATATGAAGCTCACAAATATGGACAAGAAGGGTGTTACTTTTGCCTGCATCAATAGTGCCAGCGAAGGGAAAGGTGGTCTTTCAACATTTGCCTTGAAGTTCAAGGACGGCTCCATAGTGGAGGAGTTTAAAGCCACTGTCATGGAACACAAAGGTGAGACATCCACAGTTCTCAAGACCCCTGAAAATTCTCCAAAGGCTTCTGATGATTGA
>Glyma15g01660.1 sequence type=predicted peptide gene model=Glyma15g01660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDAENALPPSKKRAAGRELTRDTPIDDEEDAPELETGTFKRASQEVMGTRRIVKVRRQPTNSAPSANPFAGIRLVAPTESSANPAETTTEVKSAGENTVADESKSNDTAKDSEKAGDGEAKQPESKTNEAEDKLTESKDAAEESNADKEHTAEKESTDDESKVDKEQNKDVTESGNEDKKDATHNESASKLDKEKTGDGKDSENDDKNENTNNVDKKDSKAESAEPSAEGGHLKSFQLLSSSQNAFTGLAGTGFSNSSFSFGSISNEGSGSIFGLKSDKPYGLGLSNNGSSLLGASGASAVSKNEGSGLAMQEVVVETGEENEEVVFNADSVLFEFADGSWKERGKGELKVNVSSETKKARLLMRSKGNFRLILNARLYPDMKLTNMDKKGVTFACINSASEGKGGLSTFALKFKDGSIVEEFKATVMEHKGETSTVLKTPENSPKASDD* >Glyma15g01660.2 sequence type=predicted peptide gene model=Glyma15g01660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDAENALPPSKKRAAGRELTRDTPIDDEEDAPELETGTFKRASQEVMGTRRIVKVRRQPTNSAPSANPFAGIRLVAPTESSANPAETTTEVKSAGENTVADESKSNDTAKDSEKAGDGEAKQPESKTNEAEDKLTESKDAAEESNADKEHTAEKESTDDESKVDKEQNKDVTESGNEDKKDATHNESASKLDKEKTGDGKDSENDDKNENTNNVDKKDSKAESAEPSAEGGHLKSFQLLSSSQNAFTGLAGTGFSNSSFSFGSISNEGSGSIFGLKSDKPYGLGLSNNGSSLLGASGASAVSKNEGSGLAMQEVVVETGEENEEVVFNADSVLFEFADGSWKERGKGELKVNVSSETKKARLLMRSKGNFRLILNARLYPDMKLTNMDKKGVTFACINSASEGKGGLSTFALKFKDGSIVEEFKATVMEHKGETSTVLKTPENSPKASDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
