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Report for Sequence Feature Glyma15g01550

Feature Type:gene_model
Chromosome:Gm15
Start:1003000
stop:1004877
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04250AT Annotation by Michelle Graham. TAIR10: AUX/IAA transcriptional regulator family protein | chr1:1136382-1138340 FORWARD LENGTH=229 SoyBaseE_val: 7.00E-58ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009734GO-bp Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008180GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signalosome SoyBaseN/AISS
GO:0019005GO-cc Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PF02309PFAM AUX/IAA family JGI ISS
UniRef100_F8J145UniRef Annotation by Michelle Graham. Most informative UniRef hit: AUX/IAA-like protein (Fragment) n=1 Tax=Pelargonium x hortorum RepID=F8J145_PELHO SoyBaseE_val: 6.00E-71ISS
UniRef100_I1MCK6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCK6_SOYBN SoyBaseE_val: 7.00E-138ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g43800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g012700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g01550.2   sequence type=transcript   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATACCGCATTACCACACTACTCCTAACTCCTATGTCTTTCAAATCATAAAGACAAAAGAAAAGAGTTAGTCATAGCAGCAAACAGGGAAAAGGCACGTACACGACCACCGTTTAGCTGTGTTTGAAGTTCGAACGTTGAAATTAATTGAGCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAGAAGTGTGTAATAATCATAATAAGCTGATAGATAAGCATTCCGTGGATACCATCAACATGTAAAAGCTCCGGTTAGAACTTAGAAGAGTGAATTTAGTTTAAGGAAATATCCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAAGTAGTTACTTTAAATGAAGAACTAGAACAAAGACTGGTCTCTATATTAACTAGTGATCTAAAAAAAAAAAAATAAGGGAAGGCTGGCATGTAATCAATATTATGATCATCGTTATATGAGTATGCATATGTAATGTATGACTTGGCTTTGTACTAGCTATATATTGTACCCCCAGTTTTGTACTTGTTAGATCTATTAGTTCACTTAATAATCATGGTTTAGTAGATTTCTATACTAGCTCCCTCCTGAATTTTTATGGGTTAATTTAACATATCATGCTGTACTTTAAATCTATTCTTATTCTTCACTTTTAATGAGAGATGGATTTATCCTTCA

>Glyma15g01550.4   sequence type=transcript   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATACCGCATTACCACACTACTCCTAACTCCTATGTCTTTCAAATCATAAAGACAAAAGAAAAGAGTTAGTCATAGCAGCAAACAGGGAAAAGGCACGTACACGACCACCGTTTAGCTGTGTTTGAAGTTCGAACGTTGAAATTAATTGAGCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAAGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAGAAGTGTGTAATAATCATAATAAGCTGATAGATAAGCATTCCGTGGATACCATCAACATGTAAAAGCTCCGGTTAGAACTTAGAAGAGTGAATTTAGTTTAAGGAAATATCCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAAGTAGTTACTTTAAATGAAGAACTAGAACAAAGACTGGTCTCTATATTAACTAGTGATCTAAAAAAAAAAAAATAAGGGAAGGCTGGCATGTAATCAATATTATGATCATCGTTATATGAGTATGCATATGTAATGTATGACTTGGCTTTGTACTAGCTATATATTGTACCCCCAGTTTTGTACTTGTTAGATCTATTAGTTCACTTAATAATCATGGTTTAGTAGATTTCTATACTAGCTCCCTCCTGAATTTTTATGGGTTAATTTAACATATCATGCTGTACTTTAAATCTATTCTTATTCTTCACTTTTAATGAGAGATGGATTTATCCTTCA

>Glyma15g01550.5   sequence type=transcript   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATACCGCATTACCACACTACTCCTAACTCCTATGTCTTTCAAATCATAAAGACAAAAGAAAAGAGTTAGTCATAGCAGCAAACAGGGAAAAGGCACGTACACGACCACCGTTTAGCTGTGTTTGAAGTTCGAACGTTGAAATTAATTGAGCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTTCGTTCATTTCTTTCTTTGTGTAATATATACAATACTATATATATGCATGATCAAATTATACGCGATGATTTTGATTTTGATTCCTCTGATTTACTAATATTGCAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAGAAGTGTGTAATAATCATAATAAGCTGATAGATAAGCATTCCGTGGATACCATCAACATGTAAAAGCTCCGGTTAGAACTTAGAAGAGTGAATTTAGTTTAAGGAAATATCCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAAGTAGTTACTTTAAATGAAGAACTAGAACAAAGACTGGTCTCTATATTAACTAGTGATCTAAAAAAAAAAAAATAAGGGAAGGCTGGCATGTAATCAATATTATGATCATCGTTATATGAGTATGCATATGTAATGTATGACTTGGCTTTGTACTAGCTATATATTGTACCCCCAGTTTTGTACTTGTTAGATCTATTAGTTCACTTAATAATCATGGTTTAGTAGATTTCTATACTAGCTCCCTCCTGAATTTTTATGGGTTAATTTAACATATCATGCTGTACTTTAAATCTATTCTTATTCTTCACTTTTAATGAGAGATGGATTTATCCTTCA

>Glyma15g01550.6   sequence type=transcript   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATACCGCATTACCACACTACTCCTAACTCCTATGTCTTTCAAATCATAAAGACAAAAGAAAAGAGTTAGTCATAGCAGCAAACAGGGAAAAGGCACGTACACGACCACCGTTTAGCTGTGTTTGAAGTTCGAACGTTGAAATTAATTGAGCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTACGTATTAATTCCATCATCATCATCTCCATTCTCCAATTCCTAATTATAGCTGGCTTGAGGGTAATTGGGTCTTTTCGTGGCAAACCATTTATATTGTCGCAGGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAGAAGTGTGTAATAATCATAATAAGCTGATAGATAAGCATTCCGTGGATACCATCAACATGTAAAAGCTCCGGTTAGAACTTAGAAGAGTGAATTTAGTTTAAGGAAATATCCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAAGTAGTTACTTTAAATGAAGAACTAGAACAAAGACTGGTCTCTATATTAACTAGTGATCTAAAAAAAAAAAAATAAGGGAAGGCTGGCATGTAATCAATATTATGATCATCGTTATATGAGTATGCATATGTAATGTATGACTTGGCTTTGTACTAGCTATATATTGTACCCCCAGTTTTGTACTTGTTAGATCTATTAGTTCACTTAATAATCATGGTTTAGTAGATTTCTATACTAGCTCCCTCCTGAATTTTTATGGGTTAATTTAACATATCATGCTGTACTTTAAATCTATTCTTATTCTTCACTTTTAATGAGAGATGGATTTATCCTTCA

>Glyma15g01550.1   sequence type=CDS   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAG

>Glyma15g01550.2   sequence type=CDS   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAG

>Glyma15g01550.4   sequence type=CDS   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAAGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAG

>Glyma15g01550.5   sequence type=CDS   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTTCGTTCATTTCTTTCTTTGTGTAA

>Glyma15g01550.6   sequence type=CDS   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTACGTATTAA

>Glyma15g01550.1   sequence type=predicted peptide   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPNREQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRNHLMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGPRSTSSKCTGST*

>Glyma15g01550.2   sequence type=predicted peptide   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPNREQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRNHLMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKSEVYFFKMYGFHLAS*

>Glyma15g01550.4   sequence type=predicted peptide   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPKEQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRNHLMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGPRSTSSKCTGST*

>Glyma15g01550.5   sequence type=predicted peptide   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPNREQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRNHLMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGSFISFFV*

>Glyma15g01550.6   sequence type=predicted peptide   gene model=Glyma15g01550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPNREQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRTY*







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