Report for Sequence Feature Glyma15g01550
Feature Type: gene_model
Chromosome: Gm15
Start: 1003000
stop: 1004877
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g01550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G04250 AT
Annotation by Michelle Graham. TAIR10: AUX/IAA transcriptional regulator family protein | chr1:1136382-1138340 FORWARD LENGTH=229
SoyBase E_val: 7.00E-58 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009734 GO-bp
Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway
SoyBase N/A ISS
GO:0000502 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008180 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: signalosome
SoyBase N/A ISS
GO:0019005 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0042802 GO-mf
Annotation by Michelle Graham. GO Molecular Function: identical protein binding
SoyBase N/A ISS
GO:0046983 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity
SoyBase N/A ISS
PF02309 PFAM
AUX/IAA family
JGI ISS
UniRef100_F8J145 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AUX/IAA-like protein (Fragment) n=1 Tax=Pelargonium x hortorum RepID=F8J145_PELHO
SoyBase E_val: 6.00E-71 ISS
UniRef100_I1MCK6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCK6_SOYBN
SoyBase E_val: 7.00E-138 ISS
Expression Patterns of Glyma15g01550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g01550
Paralog Evidence Comments
Glyma13g43800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g01550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g012700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g01550
Transcripts of Glyma15g01550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g01550.2 sequence type=transcript gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TATATACCGCATTACCACACTACTCCTAACTCCTATGTCTTTCAAATCATAAAGACAAAAGAAAAGAGTTAGTCATAGCAGCAAACAGGGAAAAGGCACGTACACGACCACCGTTTAGCTGTGTTTGAAGTTCGAACGTTGAAATTAATTGAGCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAGAAGTGTGTAATAATCATAATAAGCTGATAGATAAGCATTCCGTGGATACCATCAACATGTAAAAGCTCCGGTTAGAACTTAGAAGAGTGAATTTAGTTTAAGGAAATATCCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAAGTAGTTACTTTAAATGAAGAACTAGAACAAAGACTGGTCTCTATATTAACTAGTGATCTAAAAAAAAAAAAATAAGGGAAGGCTGGCATGTAATCAATATTATGATCATCGTTATATGAGTATGCATATGTAATGTATGACTTGGCTTTGTACTAGCTATATATTGTACCCCCAGTTTTGTACTTGTTAGATCTATTAGTTCACTTAATAATCATGGTTTAGTAGATTTCTATACTAGCTCCCTCCTGAATTTTTATGGGTTAATTTAACATATCATGCTGTACTTTAAATCTATTCTTATTCTTCACTTTTAATGAGAGATGGATTTATCCTTCA
>Glyma15g01550.4 sequence type=transcript gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TATATACCGCATTACCACACTACTCCTAACTCCTATGTCTTTCAAATCATAAAGACAAAAGAAAAGAGTTAGTCATAGCAGCAAACAGGGAAAAGGCACGTACACGACCACCGTTTAGCTGTGTTTGAAGTTCGAACGTTGAAATTAATTGAGCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAAGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAGAAGTGTGTAATAATCATAATAAGCTGATAGATAAGCATTCCGTGGATACCATCAACATGTAAAAGCTCCGGTTAGAACTTAGAAGAGTGAATTTAGTTTAAGGAAATATCCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAAGTAGTTACTTTAAATGAAGAACTAGAACAAAGACTGGTCTCTATATTAACTAGTGATCTAAAAAAAAAAAAATAAGGGAAGGCTGGCATGTAATCAATATTATGATCATCGTTATATGAGTATGCATATGTAATGTATGACTTGGCTTTGTACTAGCTATATATTGTACCCCCAGTTTTGTACTTGTTAGATCTATTAGTTCACTTAATAATCATGGTTTAGTAGATTTCTATACTAGCTCCCTCCTGAATTTTTATGGGTTAATTTAACATATCATGCTGTACTTTAAATCTATTCTTATTCTTCACTTTTAATGAGAGATGGATTTATCCTTCA
>Glyma15g01550.5 sequence type=transcript gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TATATACCGCATTACCACACTACTCCTAACTCCTATGTCTTTCAAATCATAAAGACAAAAGAAAAGAGTTAGTCATAGCAGCAAACAGGGAAAAGGCACGTACACGACCACCGTTTAGCTGTGTTTGAAGTTCGAACGTTGAAATTAATTGAGCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTTCGTTCATTTCTTTCTTTGTGTAATATATACAATACTATATATATGCATGATCAAATTATACGCGATGATTTTGATTTTGATTCCTCTGATTTACTAATATTGCAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAGAAGTGTGTAATAATCATAATAAGCTGATAGATAAGCATTCCGTGGATACCATCAACATGTAAAAGCTCCGGTTAGAACTTAGAAGAGTGAATTTAGTTTAAGGAAATATCCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAAGTAGTTACTTTAAATGAAGAACTAGAACAAAGACTGGTCTCTATATTAACTAGTGATCTAAAAAAAAAAAAATAAGGGAAGGCTGGCATGTAATCAATATTATGATCATCGTTATATGAGTATGCATATGTAATGTATGACTTGGCTTTGTACTAGCTATATATTGTACCCCCAGTTTTGTACTTGTTAGATCTATTAGTTCACTTAATAATCATGGTTTAGTAGATTTCTATACTAGCTCCCTCCTGAATTTTTATGGGTTAATTTAACATATCATGCTGTACTTTAAATCTATTCTTATTCTTCACTTTTAATGAGAGATGGATTTATCCTTCA
>Glyma15g01550.6 sequence type=transcript gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TATATACCGCATTACCACACTACTCCTAACTCCTATGTCTTTCAAATCATAAAGACAAAAGAAAAGAGTTAGTCATAGCAGCAAACAGGGAAAAGGCACGTACACGACCACCGTTTAGCTGTGTTTGAAGTTCGAACGTTGAAATTAATTGAGCTGCGCCTGCGCGTGTCACTGTTTGAGAGCACACAAACAATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTACGTATTAATTCCATCATCATCATCTCCATTCTCCAATTCCTAATTATAGCTGGCTTGAGGGTAATTGGGTCTTTTCGTGGCAAACCATTTATATTGTCGCAGGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAGAAGTGTGTAATAATCATAATAAGCTGATAGATAAGCATTCCGTGGATACCATCAACATGTAAAAGCTCCGGTTAGAACTTAGAAGAGTGAATTTAGTTTAAGGAAATATCCATGGTGCTTGATGTACATGTCCCTTTAGCACCTCTGGTTAAGTAGTTACTTTAAATGAAGAACTAGAACAAAGACTGGTCTCTATATTAACTAGTGATCTAAAAAAAAAAAAATAAGGGAAGGCTGGCATGTAATCAATATTATGATCATCGTTATATGAGTATGCATATGTAATGTATGACTTGGCTTTGTACTAGCTATATATTGTACCCCCAGTTTTGTACTTGTTAGATCTATTAGTTCACTTAATAATCATGGTTTAGTAGATTTCTATACTAGCTCCCTCCTGAATTTTTATGGGTTAATTTAACATATCATGCTGTACTTTAAATCTATTCTTATTCTTCACTTTTAATGAGAGATGGATTTATCCTTCA
Coding sequences of Glyma15g01550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g01550.1 sequence type=CDS gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAG
>Glyma15g01550.2 sequence type=CDS gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAGCTAGCTAG
>Glyma15g01550.4 sequence type=CDS gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAAGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACTTAG
>Glyma15g01550.5 sequence type=CDS gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGATCCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTTCGTTCATTTCTTTCTTTGTGTAA
>Glyma15g01550.6 sequence type=CDS gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCTCCGAATCACACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTACTGCCACAAAACGTGGCTTCTCTGATACCCTTCCTCCTTCTCAAAATAAAATCTTGCGCCCCACCTCCAAATTCCCAACACCCAACAGGGAACAACTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGCTGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGACATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACAATGTTTTGTGGCTTAGCCATTCGTACGTATTAA
Predicted protein sequences of Glyma15g01550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g01550.1 sequence type=predicted peptide gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPNREQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRNHLMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGPRSTSSKCTGST*
>Glyma15g01550.2 sequence type=predicted peptide gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPNREQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRNHLMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKSEVYFFKMYGFHLAS*
>Glyma15g01550.4 sequence type=predicted peptide gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPKEQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRNHLMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGPRSTSSKCTGST*
>Glyma15g01550.5 sequence type=predicted peptide gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPNREQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRNHLMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGSFISFFV*
>Glyma15g01550.6 sequence type=predicted peptide gene model=Glyma15g01550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSESHAVDCNLKETELTLGLPGTKTTATKRGFSDTLPPSQNKILRPTSKFPTPNREQLVGWPPVRASRKNAMKSCCKLVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRTY*