Glyma15g01420 - SoyBase

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Report for Sequence Feature Glyma15g01420

Feature Type:	gene_model
Chromosome:	Gm15
Start:	892590
stop:	896246
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g01420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80300	AT	Annotation by Michelle Graham. TAIR10: nucleotide transporter 1 \| chr1:30191954-30194280 FORWARD LENGTH=624	SoyBase	E_val: 0	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005471	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP:ADP antiporter activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PF03219	PFAM	TLC ATP/ADP transporter	JGI		ISS
UniRef100_I1MCJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCJ2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q1AK41	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plastid ATP/ADP transport protein 2 n=1 Tax=Manihot esculenta RepID=Q1AK41_MANES	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g01420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g01420

Paralog	Evidence	Comments
Glyma13g43920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g01420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g011500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g01420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g01420

Limit To All Plant Sequences

>Glyma15g01420.1   sequence type=CDS   gene model=Glyma15g01420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCTGTTCTTCAAACCAGAGGCCTTCTTTCTCTTCCCACAAACCCCATTAACAGAATCTCACTCTTGCACCCTTCACATGGTTTAAGGCACAGACTTTTCTCTCCAAAGCCAAAAAACCTTTCTGGGTCTTCTCTTTCCTCTAATGGGTTCCCCAAACTCTCACCAAAAGCCAATGTCTTTGCCCAAAGGGACAAAAACAAAAACTTTTTCTTGTGCAGGGCTGAGGCTGCTGCTGCTGCTGCAGCCTCCTTTGGGGAACCAGGAAGTGAGAAGCCAAAGCTTTTGGGTATTGAAGTTGCCACCTTGAAGAAAATCGTGCCTCTGGGATTGATGTTCTTTTGCATCCTCTTCAACTACACCATCTTAAGGGACACAAAAGATGTGTTGGTTGTGACGGCCAGAGGAAGCAGTGCTGAGATCATACCGTTTCTTAAAACCTGGGTGAACCTTCCAATGGCCATTGGGTTCATGTTATTGTACACAAAGTTGGCTAATGTGTTGTCGAAGCAGGCTCTCTTCTACTCTATTATTCTTCCCTTCATTGCATTCTTTGGGGCCTTTGGTTTTGTTTTGTACCCTCTCAGCAACTATATTCACCCTGAGGCTTTTGCGGATAAGCTTCTTAACATCCTTGGCCCGCGGTTCCTTGGCCCTCTTGCAATTATGAGAATATGGAGCTTCTGTTTGTTCTATGTCATGGCTGAATTGTGGGGGAGTGTGGTGATTTCGGTGCTGTTTTGGGGGTTTGCCAATCAGATAACTACCGTTGATGAAGCAAAAAGATTTTATCCTCTATTTGGACTTGGGGCCAATGTAGCCCTTGTGTTCTCTGGTCGGACAGTGAAATACTTTTCTAATCTGCGGAGTACTTTAGGTCCTGGAGTTGATGGTTGGGCCATCTCTCTAAAAGCAATGATGAGCATAGTTGTGGGCATGGGAGTTGCAATCTGTTTCCTGTATTGGTGGGTGAACAATTATGTTCCTCTTCCTACACGTAGCAAGAAGAAGAAGGAGAAGCCCAAGATGGGAACAATGGAGAGCATAAAGTTCTTGGTGTCTTCAAAATATATAAGGGATCTTGCCACTTTAGTGGTCGCATATGGAATTAGCATTAATCTTGTTGAGGTTACATGGAAATCAAAGCTCAAAGCTCAGTTTCCTAGCCCCAACGAGTACTCATCTTTTATGGGAGACTTCTCAACTGCAACTGGAATTGCTACATTCATAATGATGCTTCTAAGTCAATTTATATTTGACAAATATGGATGGGGAGTTGGTGCCAAGATCACCCCCACCGTCCTGCTATTGACAGGAGTTGGTTTCTTTTCTCTTATATTATTTGGCGGCCCAATTGCTCCTGTTATTGCAAAGTTTGGAATGACTCCACTGCTAGCTGCTGTATATGTGGGTGCCATGCAGAACATATTCAGCAAGAGTGCTAAGTACAGTTTATTCGATCCGTGCAAGGAAATGGCCTACATACCCTTAGATGAGGATACCAAGGTCAAGGGAAAGGCAGCCATTGATGTTGTGTGCAACCCATTGGGGAAATCTGGAGGAGCTCTGATTCAGCAGTTCATGATCTTAACTTTTGGTTCACTAGCTAACTCAACCCCATACCTAGGAGGGGTCCTTCTGGTGATTGTTCTTGTCTGGTTATCAGCGGCCAAGTCGCTTGATACCCAGTTTACTGCATTGCGCCGAGAAGAAGAACTTGAGAAAGAGATGGAAAGAGCAGCAGCTGTTAAGATACCAGTGGTGGCCAAGGATGAGGATGAAAATGGTTCTCTTAAAAGTGTTCCACTGTTAAATCCAACAGCTGGTGACTCCTCAAGTATATTGAATTGA

Predicted protein sequences of Glyma15g01420

Limit To All Plant Sequences

>Glyma15g01420.1   sequence type=predicted peptide   gene model=Glyma15g01420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAVLQTRGLLSLPTNPINRISLLHPSHGLRHRLFSPKPKNLSGSSLSSNGFPKLSPKANVFAQRDKNKNFFLCRAEAAAAAAASFGEPGSEKPKLLGIEVATLKKIVPLGLMFFCILFNYTILRDTKDVLVVTARGSSAEIIPFLKTWVNLPMAIGFMLLYTKLANVLSKQALFYSIILPFIAFFGAFGFVLYPLSNYIHPEAFADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALVFSGRTVKYFSNLRSTLGPGVDGWAISLKAMMSIVVGMGVAICFLYWWVNNYVPLPTRSKKKKEKPKMGTMESIKFLVSSKYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFIMMLLSQFIFDKYGWGVGAKITPTVLLLTGVGFFSLILFGGPIAPVIAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGVLLVIVLVWLSAAKSLDTQFTALRREEELEKEMERAAAVKIPVVAKDEDENGSLKSVPLLNPTAGDSSSILN*

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