Glyma15g01360 - SoyBase

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Report for Sequence Feature Glyma15g01360

Feature Type:	gene_model
Chromosome:	Gm15
Start:	828905
stop:	832173
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g01360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80230	AT	Annotation by Michelle Graham. TAIR10: Rubredoxin-like superfamily protein \| chr1:30169784-30170999 REVERSE LENGTH=171	SoyBase	E_val: 4.00E-56	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005740	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial envelope	SoyBase	N/A	ISS
GO:0004129	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cytochrome-c oxidase activity	SoyBase	N/A	ISS
KOG3352	KOG	Cytochrome c oxidase, subunit Vb/COX4	JGI		ISS
PTHR10122	Panther	CYTOCHROME C OXIDASE	JGI		ISS
PF01215	PFAM	Cytochrome c oxidase subunit Vb	JGI		ISS
UniRef100_G7IMH7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c oxidase subunit 5B n=1 Tax=Medicago truncatula RepID=G7IMH7_MEDTR	SoyBase	E_val: 3.00E-71	ISS
UniRef100_I1MCI6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCI6_SOYBN	SoyBase	E_val: 3.00E-107	ISS

Expression Patterns of Glyma15g01360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g01360

Paralog	Evidence	Comments
Glyma13g43980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g01360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g010900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g01360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g01360

Limit To All Plant Sequences

>Glyma15g01360.2   sequence type=transcript   gene model=Glyma15g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTATTGGGTTTGGCCTTGGCCCCTGGAGGTTTCAAAGGCAAGGAGCATACATACATACATATATATACAGATACACGGTGAGTAGAAGAAAAGGAGAATCTAAATTCTAAGGAAACTCCTCAGATCGAAATCGAAACCATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAATCCCTACACACAGCACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAGCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATCACCATTGATTGCATCCCGTAATTTTCCTTCAGAAATAAAATTTGCAAAGAGAAGAGAGACATTTCCACCTTTCAAAATTATGAGGCATTGTTTTGTTCGGATTTGATTGGTCTATACCTTGCGGTTTTGCGACTATAGATATAGAAGATTTCTGTGATTATTTTTTAGACACACTTTGGTCACATTCGATTCAGTTATCAAATCCTTTTAGGATTTTTGTTTTTGGCTTTGCCAAATAAATAATTGATAGCAACACTAATTTTTTTAACGATTCTTGAATATATGTAGATCGTACAACTATGTGAAGCACCTAAACCACGAAAGGGATTAAGGATTACAAACTTGATCGAATTGAAATATTTACATTGCAGATGGAAACAGCTTAA

Coding sequences of Glyma15g01360

Limit To All Plant Sequences

>Glyma15g01360.1   sequence type=CDS   gene model=Glyma15g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAATCCCTACACACAGCACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGGGAAGGGATATTCTTGAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAGCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATCACCATTGA

>Glyma15g01360.2   sequence type=CDS   gene model=Glyma15g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAATCCCTACACACAGCACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCCTCTCCTCACCCGCCACGTGACCGCTCATTCAGGTGCTTCTTCCGTCAAAAGGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCTGATCTTGAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGCGAAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTAAAGAATGTCCAGTGTGCTCACAGTATTTTAAGCTCGAAGTGGTCGGACCTGGTGGTGATCCTTATGGACATGGAGATCATGATCACCATTGA

Predicted protein sequences of Glyma15g01360

Limit To All Plant Sequences

>Glyma15g01360.1   sequence type=predicted peptide   gene model=Glyma15g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWRRLFSSSNLKSLHTALSPSRPRLAAPLLTRHVTAHSGASSVKRRVEDVVPIATGHEREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEGEDEHDVVWFWLEKGKPKECPVCSQYFKLEVVGPGGDPYGHGDHDHH*

>Glyma15g01360.2   sequence type=predicted peptide   gene model=Glyma15g01360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWRRLFSSSNLKSLHTALSPSRPRLAAPLLTRHVTAHSGASSVKRRVEDVVPIATGHEREEIQADLEEAPAVVKSYFDRRIVGCPGDEGEDEHDVVWFWLEKGKPKECPVCSQYFKLEVVGPGGDPYGHGDHDHH*

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