SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15420 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). | chr1:5301794-5303296 REVERSE LENGTH=278 | SoyBase | E_val: 1.00E-42 | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF04003 | PFAM | Dip2/Utp12 Family | JGI | ISS | |
| UniRef100_I1MCI3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCI3_SOYBN | SoyBase | E_val: 3.00E-162 | ISS |
| UniRef100_Q2QLN8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLN8_ORYSJ | SoyBase | E_val: 9.00E-30 | ISS |
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Glyma15g01330 not represented in the dataset |
Glyma15g01330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g44010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g010600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g01330.2 sequence type=CDS gene model=Glyma15g01330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGGATCAAGGCCAGGTTGCAGATGGAATCCTTCATGATGTTCATTTAAGTGAGCCAACTATGGGAGAGAAACTTGCTGCTCTCAGTTTGCCAGATAAGAACAAATTCAGGAGGGATAAAGAGCAAGATTCTTCTGACCCAACTAAGCCTCCAAGTGCAGACTCTGTACATGTTTTGCTTGGGCAAGCATTAAATGCTGATGGTCGCACCCTTCTGCTAGATTGCTTGTATACGCAGGATGAGAAGGTTATTACAAAGTCAATTGCACAGTTGAACCCATCAAACGTCCTCAAATTCCTACACCCTCTCATATCCATTAATGAGTCTAGGATGTGGATTGTATGCTATACTTGTACTACCTACACTGGAGGGTTTTTTTTTTTGGCTTGTCTTGTTCTACAGCATGCAAGTGCGATAATGTCCCAGGAATCTTCATTACATGTTTTGAACTCATTGTATCAGCTGATTGAATCTAGAGTTTGGACTTTTGAATCTGCCGTTCATTTGTCAAGTTGCGTAGACATTCATTACACAGGGGTTGCTGATGAAGAAGTAGATGAAGGTCAAACAGTGCCAGTTATCTATGAGGATGACAGTTCAGAAGAATCCGGGGATTTGGAAACTGATGAAGCATTTGAAGTATTCAGTGATATTGAAGAAAGTAACGATATGATGAGCGAGTGA
>Glyma15g01330.2 sequence type=predicted peptide gene model=Glyma15g01330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ADQGQVADGILHDVHLSEPTMGEKLAALSLPDKNKFRRDKEQDSSDPTKPPSADSVHVLLGQALNADGRTLLLDCLYTQDEKVITKSIAQLNPSNVLKFLHPLISINESRMWIVCYTCTTYTGGFFFLACLVLQHASAIMSQESSLHVLNSLYQLIESRVWTFESAVHLSSCVDIHYTGVADEEVDEGQTVPVIYEDDSSEESGDLETDEAFEVFSDIEESNDMMSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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