SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15410 | AT | Annotation by Michelle Graham. TAIR10: aspartate-glutamate racemase family | chr1:5299577-5300681 FORWARD LENGTH=330 | SoyBase | E_val: 6.00E-125 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016855 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives | SoyBase | N/A | ISS |
| PF01177 | PFAM | Asp/Glu/Hydantoin racemase | JGI | ISS | |
| UniRef100_Q2HVX3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Asp/Glu racemase n=2 Tax=Medicago truncatula RepID=Q2HVX3_MEDTR | SoyBase | E_val: 5.00E-168 | ISS |
| UniRef100_UPI000233ABC1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ABC1 related cluster n=1 Tax=unknown RepID=UPI000233ABC1 | SoyBase | E_val: 0 | ISS |
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Glyma15g01280 not represented in the dataset |
Glyma15g01280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g44050 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g010100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g01280.1 sequence type=CDS gene model=Glyma15g01280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGGATGTGATGTCTTTGAGTTACCCCTTCCAAACATTGTTGTTAGGTTGTGTAACTACTCCTAGTCGTAGATACTTGAGCAAGACAAGGTGGTACCAAGTTCAAGCCACACCCCCATCTTCACTTATTCTGAATGCAGATGAAAGTGGCAAGTTTTCTGAGAAGCTTCATGGCTCAAACCTTGCTTCGGGGAGGGGTGCTCCTTTTGTCACTCAGGGAAGTGCTGTTGGTATAATTGGAGGAGTGTCTATGGATGCCACTCTAAAATTTTTGAGAAAACTTGTAGAGTTTAGTTCAGAAGATGGAGCTAATTCCATCCCTTTTGTACTGTGTTCTGATCCTCTCTTGAGTAAGGAGCTTCTGTCCTATGAAAGGAGTATTTTTGCTTCTAGCACAAGTAAAGCAGAAAACTTGAAGCAGGATTCTTCTCCAATTGTGCAAACTCTTAGAAATAAGAGGGTTTTTCTTGAGAATTTTGGGACTAGTTGCACCGTTATGCCCTGTAATGTGTCACATTCTTGGTATGAACAAGTGTCCGAGGGATGTTCTGTTCCTGTTCTTCACATGGCCGAGTGCGTCGCCAAGGAGCTCAAGGAAGCTAAGCTAAAGCCACTTGAAGCCGGTAGTCCTTTGCGGATTGGAGTGCTTGCAACAAATGCAACTCTAGCAGCTGGTGTTTATAAGGAGAAGCTTCAGAATGAAGGATTTGACGTTGTACTGCCTGATAGAGCAACGATGGAGCATACAGTAATACCTGCAATGGAAGCTTTGAATAGAAAGGACATGGAAGGGGCATGCAATCTATTGAGAATTGCACTTCAAGTTCTTTTGGTGAGAGCTGCAAATTCTGTTATCCTTGCTTCTGATGATATGCGGGACCTCTTGCCCCCAGATGATCCTCTTCTCAAGAAATGTATTGATCCAATGGATGCATTAGCCCGATCAACTATCAAATGGGTAAAATCCTCTGGGCATAATACATGA
>Glyma15g01280.1 sequence type=predicted peptide gene model=Glyma15g01280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLDVMSLSYPFQTLLLGCVTTPSRRYLSKTRWYQVQATPPSSLILNADESGKFSEKLHGSNLASGRGAPFVTQGSAVGIIGGVSMDATLKFLRKLVEFSSEDGANSIPFVLCSDPLLSKELLSYERSIFASSTSKAENLKQDSSPIVQTLRNKRVFLENFGTSCTVMPCNVSHSWYEQVSEGCSVPVLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGVYKEKLQNEGFDVVLPDRATMEHTVIPAMEALNRKDMEGACNLLRIALQVLLVRAANSVILASDDMRDLLPPDDPLLKKCIDPMDALARSTIKWVKSSGHNT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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