Glyma15g01040 - SoyBase

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Report for Sequence Feature Glyma15g01040

Feature Type:	gene_model
Chromosome:	Gm15
Start:	635694
stop:	638187
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g01040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15340	AT	Annotation by Michelle Graham. TAIR10: methyl-CPG-binding domain 10 \| chr1:5275895-5277474 REVERSE LENGTH=384	SoyBase	E_val: 7.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008327	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyl-CpG binding	SoyBase	N/A	ISS
PF01429	PFAM	Methyl-CpG binding domain	JGI		ISS
UniRef100_B9RV64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleosome-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RV64_RICCO	SoyBase	E_val: 2.00E-59	ISS
UniRef100_C6TKN4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TKN4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g01040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g01040

Paralog	Evidence	Comments
Glyma13g44230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g01040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g007700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g01040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g01040

Limit To All Plant Sequences

>Glyma15g01040.1   sequence type=CDS   gene model=Glyma15g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATGCGGAGGAGATGATGCAGCAAAACGACGAGGTTTTGTCGGTTGAACTTCCAGCTCCTTCCGGTTGGAATAAACTGTTTTTCCCTAAGAAACTGGGAACACCAAGAAAAAGTGAGATTGTATTCATTGCTCCAACTGGAGAGGAGATCAGTACCAAAAAACAATTGGAGCAGTACCTAAAGGCACATCCTGGCAATCCTGTCATTTCAGAGTTTGACTGGGGAACTGGTGAGACCCCTAGGCGATCAGCAAGGATCAGTGAGAAGGTCAAGTCAACTCCACCAGCAGATAGTGATACTCCAAAGAAACGAGCTCGGAAATCATCAGGATCAAAGAAGGATAACAAAGAAACTGAATCTGCATCAGAGGAAGGCAAGGCAAAGTCTGATACTGAAGATCCCAAGGCTGCAGAGGAGGAGAAAAATGAAGGAAATGATAACTCTAATTCTGGAGGAAAGCAACTTGAGAATGGAGATAAAACTGAACAAATTGATGAACAGGCCAAGAAGCCAGATGTAGATATGGAAGAAAATGATCTGAATGATACAAACAATAAATTAGAAAATGATTCAGATGAAATTAAGAACAGTCATGTGAACGGCGAAAATGTGATTGCTGAAAGGCCTGAAGGTGAAGAAGCTCAAAAGCAAGAAGTTGAACCAGCAGAGAAAGTTGCCGAAGAAGCTGCTAATACTGCGGAGACTGAAAAATCCCTACTGACTGAATTAGAAAAAGAAAAGAATGAGGAGAAAACAGATACTGCGACTCTAGAGGCTAATGGGGGAGGCGAGAAAGAGAATCCTAATGCTGCACAAATGTAA

Predicted protein sequences of Glyma15g01040

Limit To All Plant Sequences

>Glyma15g01040.1   sequence type=predicted peptide   gene model=Glyma15g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENAEEMMQQNDEVLSVELPAPSGWNKLFFPKKLGTPRKSEIVFIAPTGEEISTKKQLEQYLKAHPGNPVISEFDWGTGETPRRSARISEKVKSTPPADSDTPKKRARKSSGSKKDNKETESASEEGKAKSDTEDPKAAEEEKNEGNDNSNSGGKQLENGDKTEQIDEQAKKPDVDMEENDLNDTNNKLENDSDEIKNSHVNGENVIAERPEGEEAQKQEVEPAEKVAEEAANTAETEKSLLTELEKEKNEEKTDTATLEANGGGEKENPNAAQM*

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