SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma15g01010

Feature Type:gene_model
Chromosome:Gm15
Start:615670
stop:617400
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80100AT Annotation by Michelle Graham. TAIR10: histidine phosphotransfer protein 6 | chr1:30133818-30134652 FORWARD LENGTH=154 SoyBaseE_val: 4.00E-61ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG4747 KOG Two-component phosphorelay intermediate involved in MAP kinase cascade regulation JGI ISS
PF01627PFAM Hpt domain JGI ISS
UniRef100_G7II71UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histidine phosphotransfer protein n=1 Tax=Medicago truncatula RepID=G7II71_MEDTR SoyBaseE_val: 5.00E-85ISS
UniRef100_I1MCF1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCF1_SOYBN SoyBaseE_val: 2.00E-109ISS

LocusGene SymbolProtein Name
PHP3 Root Specific, Phosphotransfer Protein

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g007400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g01010.1   sequence type=CDS   gene model=Glyma15g01010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGGTTTCGGTGCGGACCTCTTGTGGGCCGACATGAACCGTCTACTCGCCTTTCTTTTCCACCAGGGAGTGTTGGATGAGCAATTTTTGCAGCTTCAACAGCTGCAAGATGAGGCCTCCCCTAACTTCGTCTCTGAGGTCGTCAACATTTATTTCCACGAGTCCGAGAAGCTACTCACCAATCTCAGAGGATTGCTAATGGAAAGGGAGTACAAGAAAATGGGGATCCATTTGAATCAGTTCATGGGTAGCAGCTCAAGCATTGGTGCCAAGAGAGTCACAAACGTCTGTGCTGCCTTTCGTGCTGCTACTGACCAGAGCAACCGTGCTGGATGCTTGCGAGCGTTGGAGATGCTGGAGCATGAATATTGCTATCTCAAGAACAAATTGCATGAACTGTTCCAAATAGAGCAGCAACGTGCTTTGGTAGCAGGAGTGAGATACCCTGTGCAGAATCAATAA

>Glyma15g01010.1   sequence type=predicted peptide   gene model=Glyma15g01010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGFGADLLWADMNRLLAFLFHQGVLDEQFLQLQQLQDEASPNFVSEVVNIYFHESEKLLTNLRGLLMEREYKKMGIHLNQFMGSSSSIGAKRVTNVCAAFRAATDQSNRAGCLRALEMLEHEYCYLKNKLHELFQIEQQRALVAGVRYPVQNQ*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo