Glyma15g00920 - SoyBase

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Report for Sequence Feature Glyma15g00920

Feature Type:	gene_model
Chromosome:	Gm15
Start:	559759
stop:	561380
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g00920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15920	AT	Annotation by Michelle Graham. TAIR10: Phox (PX) domain-containing protein \| chr3:5383768-5386955 REVERSE LENGTH=755	SoyBase	E_val: 2.00E-28	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
UniRef100_D7L4Y9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phox domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L4Y9_ARALL	SoyBase	E_val: 2.00E-27	ISS
UniRef100_I1M5V3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5V3_SOYBN	SoyBase	E_val: 5.00E-174	ISS

Expression Patterns of Glyma15g00920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g00920

Paralog	Evidence	Comments
Glyma13g44340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g00920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g006600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g00920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g00920

Limit To All Plant Sequences

>Glyma15g00920.1   sequence type=CDS   gene model=Glyma15g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGTTGTTACCGGACGTTGATGTATCAAGAAGTGCCCCGGTGGCAATGTTTCTTGAGCTAGAAGCTGCTGCTAGATCATCATTCCATGATGTGAATGAGCATGTTTCGGATGAAGCATCTGCTAATGCTACCACACCGTCACATATGATCCAAGATAACTCACCTGGTTCTGTAAAAGCTCACGGTTCATCTGCAGCAATAGTTCCTGGTAACAATGAAGTTTCTGAGCTGGGAACACCACAACATGGAAAGGATAACTGTTCTGATCAAATCATGGATAATTCAACATTGGAACATGGCTTAATTAATCCAACTGAAACGAATGTTCATTGTGCCACATCCAGTGAAAACTTCGTTTATAAGGATAATATTACAGACAAAGTCACTGGGTATACTGCTGATGCTATAGCTATTCACCTAGATGGAACTGAGTTTACACCTGCTGTACAAGATTATAACTTGAATGCTCATGTTAAGAGACTGTCAACAGAAAACATTACAAGTGACTTAAGTTCTCTAAGGAATACCGAAACATCTAATTTAACTACAACCACTTTGGTTCAGGATGCTTTGCATAGCCTTGCGGGGAGCCATGAAGCCTCAAGAAACTCAGATTTATTTTTTACTTTTCCATTGGATGAGCAGCACAAATTGAAGAAAATTCTTAATACCCAGAAACAGAGATTGGTGACTACAAAAGCTGATGTTGAAGATCTTATAGCAAGATTGAATCAAGAAATGGCTGCAAGACAATATCTTGTGACAAAGGATGAAAGGCTGCTAGCAGAATCTACGAAAGAATCTGTCATTCAGGAGAAGCAAATGTTGCAGCAAGAGCTAGATGTAGCCAGAGAACAACTTAAGCACTTGCAAAAACATCATGATGAGTTTGAGATGAAATCAAAGACAGATATGAAGGTTCTGATAAAGGAG

Predicted protein sequences of Glyma15g00920

Limit To All Plant Sequences

>Glyma15g00920.1   sequence type=predicted peptide   gene model=Glyma15g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKLLPDVDVSRSAPVAMFLELEAAARSSFHDVNEHVSDEASANATTPSHMIQDNSPGSVKAHGSSAAIVPGNNEVSELGTPQHGKDNCSDQIMDNSTLEHGLINPTETNVHCATSSENFVYKDNITDKVTGYTADAIAIHLDGTEFTPAVQDYNLNAHVKRLSTENITSDLSSLRNTETSNLTTTTLVQDALHSLAGSHEASRNSDLFFTFPLDEQHKLKKILNTQKQRLVTTKADVEDLIARLNQEMAARQYLVTKDERLLAESTKESVIQEKQMLQQELDVAREQLKHLQKHHDEFEMKSKTDMKVLIKE

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