SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02580 | AT | Annotation by Michelle Graham. TAIR10: NADH-ubiquinone oxidoreductase 24 kDa subunit, putative | chr4:1134586-1136906 FORWARD LENGTH=255 | SoyBase | E_val: 6.00E-166 | ISS |
| GO:0006120 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, NADH to ubiquinone | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005747 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I | SoyBase | N/A | ISS |
| GO:0008137 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG3196 | KOG | NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit | JGI | ISS | |
| PTHR10371 | Panther | NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT | JGI | ISS | |
| PF01257 | PFAM | Respiratory-chain NADH dehydrogenase 24 Kd subunit | JGI | ISS | |
| UniRef100_G7II91 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADH-ubiquinone oxidoreductase 24 kDa subunit n=1 Tax=Medicago truncatula RepID=G7II91_MEDTR | SoyBase | E_val: 2.00E-172 | ISS |
| UniRef100_I1M5V6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M5V6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g00900 not represented in the dataset |
Glyma15g00900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g44380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g006400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g00900.1 sequence type=CDS gene model=Glyma15g00900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGGCACGCCTCGCCGCGAGTCGCTTCAACGAGATCCGTCAGATTTTCCGTCAGCCTTCTAGGGCTTTCTCAACCGCTCTGAACTACCACCTTGACACACCGGACAACAACCCTAAACTTCCATGGGAATTCACCGAGGCCAATCAAGCAAAGGTTAAGGAGATTTTGTCTCACTATCCATCCAACTATAAGCAATCTGCTACAATTCCTCTTTTAGATCTTGCCCAGCAGCAGCATGGAGGTTGGCTACCTGTTTCTGCAATGGATGCGGTAGCTAAGATTGTAGAGGTTCCTCCCATACGGGTGTATGAGGTTGCCACATTTTACTCCATGTTCAATCGAGCTAAGGTTGGGAAGTACCATCTGTTGGTTTGTGGAACAACACCTTGTATGATAAGAGGTTCACGAGGAATTGAAGAAGCCTTATTGAAACACTTGGGAGTGAAGCGCAATGAAGTAACACCAGATGGTTTGTTTTCTGTTGGAGAAATGGAATGCATGGGATGCTGTGTGAATGCTCCTATGATTACAGTGGCTGATTATTCAAATGGATCAGAGGGATATACTTATAATTACTTTGAAGATGTAACCCCAGAGAAAGTAGTTGAGATAGTAGAAAAGCTGAGAAAGGGTGAGAAGCCACCGCACGGCACCCAAAATCCCCGCCGAATTAAGAGTGGACCTGAAGGAGGGAACACTACTTTGTTAAGTGAGCCCAAGCCTCCTCCCTGCCGTGACCTGGATTCCTGCTGA
>Glyma15g00900.1 sequence type=predicted peptide gene model=Glyma15g00900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLARLAASRFNEIRQIFRQPSRAFSTALNYHLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRGIEEALLKHLGVKRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPPCRDLDSC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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