Glyma15g00890 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma15g00890): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma15g00890): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma15g00890

Feature Type:	gene_model
Chromosome:	Gm15
Start:	542112
stop:	546081
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g00890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18430	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr3:6326180-6327476 FORWARD LENGTH=175	SoyBase	E_val: 3.00E-105	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0051645	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi localization	SoyBase	N/A	ISS
GO:0051646	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion localization	SoyBase	N/A	ISS
GO:0060151	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome localization	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0034	KOG	Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein	JGI		ISS
PTHR23056	Panther	CALCINEURIN B	JGI		ISS
PTHR23056:SF4	Panther	CALCINEURIN B SUBUNIT	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_I1MCD8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MCD8_SOYBN	SoyBase	E_val: 6.00E-123	ISS
UniRef100_Q7FZ95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin-like protein n=2 Tax=Eucalyptus RepID=Q7FZ95_EUCGR	SoyBase	E_val: 8.00E-110	ISS

Expression Patterns of Glyma15g00890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g00890 not represented in the dataset	Glyma15g00890 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g00890

Paralog	Evidence	Comments
Glyma13g44390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g00890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g006300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g00890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g00890

Limit To All Plant Sequences

>Glyma15g00890.2   sequence type=transcript   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAGACATAAATGTGAAAGGGTGGATCCATGGACACACTAGTTTGCGGGTAGCGAGGTGCGTTGGAGAGAGTCGATGATGAGAAGGCAAGGCACGTGTATATATTCGCAGGTGGTCTTCTGATTACTGATTCTGGTTTGAAGCCCAAAATTAGTTTAGTGGATATGGGGACTGCATCATCTATTCTAACTCAATACGACATCGAGGAAGTTCAGGAACACTGCAATAATTTATGTGGGTCCTCTCTCCCTTTATTATTCTTCTTTCTCTTTATTAAGATCTGAAAATTGGGTTTCAAACTTAGTTTCCCAGCAGGAAATTGTGTCCTTATATCAAAGGTTTTGTCAACTTGACCGCAACGCCAAGGGATTTATTTCCGCAGATGAGTTCTTGTCCGTTCCCGAATTTGCCATGAATCCACTTTCTCAGGTATACTCTTCCTTTTACTTCCCATCACTACATGTACATGCATTTTCCATACTTGATGGATTCTGTCTGTTCTTATTTGCAGAGGCTGCTCAAGATGGTCGACGGTTTGAATTTTAAAGACTTTGTGGCCTTCTTATCTGCATTCAGTGCCAAAGCGAGCGCACAACAAAAAATAGAGCTTATTTTCAAAGTATATGATTCAGACCGCAATGGAAAGGTGTCTTTCAAAGATATGCTGGAAGTGCTAAAAGATTTGTCGGGTCCATTCATGTCTGATGAACAGAGAGAGGAAGTTCTCAGCCAAGTTCTAAGAGAAGCGGGATACACAAAAGACTCCTACTTGACATTGGATGACTTCATTAAGGTTCTTGGTCAATCTGACCTAAAAATGGATGTTGAAGTCCCTGTTGATTGAAACTACCTGCAGTTTTCCCTGTTCTCTTGAAAGATAAAAATTGTAAACTCTATTCGTAGGATTCTTGTAACATATTTAATGTGGAAATGAAAAGTGCACAAATACTGCTGTCCCCCTTCTTCTGGGGATTCTTGTAATGCTGTTAGTTTTCCAACCACTAGCTGTTATAGAGCCAATTTGAGAAGCTCGAGCATGATTCGGAAGTTTTCAAATTCTTTGACATGTTTTACAACCTTTTGTGTCTCCTGGATTCAGTTTTGAGGTGGATTTTTTTATTTTATTTATTTCAAGTTTCTTACTGTTGATGAATTTTCCAAGTTCAAGTTTCTAACCCTTCTAGTTGTTTGCTGCGTG

>Glyma15g00890.3   sequence type=transcript   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAGACATAAATGTGAAAGGGTGGATCCATGGACACACTAGTTTGCGGGTAGCGAGGTGCGTTGGAGAGAGTCGATGATGAGAAGGCAAGGCACGTGTATATATTCGCAGGTGGTCTTCTGATTACTGATTCTGGTTTGAAGCCCAAAATTAGTTTAGTGGATATGGGGACTGCATCATCTATTCTAACTCAATACGACATCGAGGAAGTTCAGGAACACTGCAATAATTTATGTGGGTCCTCTCTCCCTTTATTATTCTTCTTTCTCTTTATTAAGATCTGAAAATTGGGTTTCAAACTTAGTTTCCCAGCAGGAAATTGTGTCCTTATATCAAAGGTTTTGTCAACTTGACCGCAACGCCAAGGGATTTATTTCCGCAGATGAGTTCTTGTCCGTTCCCGAATTTGCCATGAATCCACTTTCTCAGAGGCTGCTCAAGATGGTCGACGGTTTGAATTTTAAAGACTTTGTGGCCTTCTTATCTGCATTCAGTGCCAAAGCGAGCGCACAACAAAAAATAGAGCTTATTTTCAAAGTATATGATTCAGACCGCAATGGAAAGGTGTCTTTCAAAGATATGCTGGAAGTGCTAAAAGATTTGTCGGGTCCATTCATGTCTGATGAACAGAGAGAGGAAGTTCTCAGCCAAGTTCTAAGAGAAGCGGGATACACAAAAGACTCCTACTTGACATTGGATGACTTCATTAAGGTTCTTGGTCAATCTGACCTAAAAATGGATGTTGAAGTCCCTGTTGATTGAAACTACCTGCAGTTTTCCCTGTTCTCTTGAAAGATAAAAATTGTAAACTCTATTCGTAGGATTCTTGTAACATATTTAATGTGGAAATGAAAAGTGCACAAATACTGCTGTCCCCCTTCTTCTGGGGATTCTTGTAATGCTGTTAGTTTTCCAACCACTAGCTGTTATAGAGCCAATTTGAGAAGCTCGAGCATGATTCGGAAGTTTTCAAATTCTTTGACATGTTTTACAACCTTTTGTGTCTCCTGGATTCAGTTTTGAGGTGGATTTTTTTATTTTATTTATTTCAAGTTTCTTACTGTTGATGAATTTTCCAAGTTCAAGTTTCTAACCCTTCTAGTTGTTTGCTGCGTG

>Glyma15g00890.4   sequence type=transcript   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAGACATAAATGTGAAAGGGTGGATCCATGGACACACTAGTTTGCGGGTAGCGAGGTGCGTTGGAGAGAGTCGATGATGAGAAGGCAAGGCACGTGTATATATTCGCAGGTGGTCTTCTGATTACTGATTCTGGTTTGAAGCCCAAAATTAGTTTAGTGGATATGGGGACTGCATCATCTATTCTAACTCAATACGACATCGAGGAAGTTCAGGAACACTGCAATAATTTATGAAATTGTGTCCTTATATCAAAGGTTTTGTCAACTTGACCGCAACGCCAAGGGATTTATTTCCGCAGATGAGTTCTTGTCCGTTCCCGAATTTGCCATGAATCCACTTTCTCAGAGGCTGCTCAAGATGGTCGACGGTTTGAATTTTAAAGACTTTGTGGCCTTCTTATCTGCATTCAGTGCCAAAGCGAGCGCACAACAAAAAATAGAGCTTATTTTCAAAGTATATGATTCAGACCGCAATGGAAAGGTGTCTTTCAAAGATATGCTGGAAGTGCTAAAAGATTTGTCGGGTCCATTCATGTCTGATGAACAGAGAGAGGAAGTTCTCAGCCAAGTTCTAAGAGAAGCGGGATACACAAAAGACTCCTACTTGACATTGGATGACTTCATTAAGGTTCTTGGTCAATCTGACCTAAAAATGGATGTTGAAGTCCCTGTTGATTGAAACTACCTGCAGTTTTCCCTGTTCTCTTGAAAGATAAAAATTGTAAACTCTATTCGTAGGATTCTTGTAACATATTTAATGTGGAAATGAAAAGTGCACAAATACTGCTGTCCCCCTTCTTCTGGGGATTCTTGTAATGCTGTTAGTTTTCCAACCACTAGCTGTTATAGAGCCAATTTGAGAAGCTCGAGCATGATTCGGAAGTTTTCAAATTCTTTGACATGTTTTACAACCTTTTGTGTCTCCTGGATTCAGTTTTGAGGTGGATTTTTTTATTTTATTTATTTCAAGTTTCTTACTGTTGATGAATTTTCCAAGTTCAAGTTTCTAACCCTTCTAGTTGTTTGCTGCGTG

Coding sequences of Glyma15g00890

Limit To All Plant Sequences

>Glyma15g00890.1   sequence type=CDS   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACTGCATCATCTATTCTAACTCAATACGACATCGAGGAAGTTCAGGAACACTGCAATAATTTATTTTCCCAGCAGGAAATTGTGTCCTTATATCAAAGGTTTTGTCAACTTGACCGCAACGCCAAGGGATTTATTTCCGCAGATGAGTTCTTGTCCGTTCCCGAATTTGCCATGAATCCACTTTCTCAGAGGCTGCTCAAGATGGTCGACGGTTTGAATTTTAAAGACTTTGTGGCCTTCTTATCTGCATTCAGTGCCAAAGCGAGCGCACAACAAAAAATAGAGCTTATTTTCAAAGTATATGATTCAGACCGCAATGGAAAGGTGTCTTTCAAAGATATGCTGGAAGTGCTAAAAGATTTGTCGGGTCCATTCATGTCTGATGAACAGAGAGAGGAAGTTCTCAGCCAAGTTCTAAGAGAAGCGGGATACACAAAAGACTCCTACTTGACATTGGATGACTTCATTAAGGTTCTTGGTCAATCTGACCTAAAAATGGATGTTGAAGTCCCTGTTGATTGA

>Glyma15g00890.2   sequence type=CDS   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACATGCATTTTCCATACTTGATGGATTCTGTCTGTTCTTATTTGCAGAGGCTGCTCAAGATGGTCGACGGTTTGAATTTTAAAGACTTTGTGGCCTTCTTATCTGCATTCAGTGCCAAAGCGAGCGCACAACAAAAAATAGAGCTTATTTTCAAAGTATATGATTCAGACCGCAATGGAAAGGTGTCTTTCAAAGATATGCTGGAAGTGCTAAAAGATTTGTCGGGTCCATTCATGTCTGATGAACAGAGAGAGGAAGTTCTCAGCCAAGTTCTAAGAGAAGCGGGATACACAAAAGACTCCTACTTGACATTGGATGACTTCATTAAGGTTCTTGGTCAATCTGACCTAAAAATGGATGTTGAAGTCCCTGTTGATTGA

>Glyma15g00890.3   sequence type=CDS   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCACTTTCTCAGAGGCTGCTCAAGATGGTCGACGGTTTGAATTTTAAAGACTTTGTGGCCTTCTTATCTGCATTCAGTGCCAAAGCGAGCGCACAACAAAAAATAGAGCTTATTTTCAAAGTATATGATTCAGACCGCAATGGAAAGGTGTCTTTCAAAGATATGCTGGAAGTGCTAAAAGATTTGTCGGGTCCATTCATGTCTGATGAACAGAGAGAGGAAGTTCTCAGCCAAGTTCTAAGAGAAGCGGGATACACAAAAGACTCCTACTTGACATTGGATGACTTCATTAAGGTTCTTGGTCAATCTGACCTAAAAATGGATGTTGAAGTCCCTGTTGATTGA

>Glyma15g00890.4   sequence type=CDS   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCACTTTCTCAGAGGCTGCTCAAGATGGTCGACGGTTTGAATTTTAAAGACTTTGTGGCCTTCTTATCTGCATTCAGTGCCAAAGCGAGCGCACAACAAAAAATAGAGCTTATTTTCAAAGTATATGATTCAGACCGCAATGGAAAGGTGTCTTTCAAAGATATGCTGGAAGTGCTAAAAGATTTGTCGGGTCCATTCATGTCTGATGAACAGAGAGAGGAAGTTCTCAGCCAAGTTCTAAGAGAAGCGGGATACACAAAAGACTCCTACTTGACATTGGATGACTTCATTAAGGTTCTTGGTCAATCTGACCTAAAAATGGATGTTGAAGTCCCTGTTGATTGA

Predicted protein sequences of Glyma15g00890

Limit To All Plant Sequences

>Glyma15g00890.1   sequence type=predicted peptide   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTASSILTQYDIEEVQEHCNNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVDGLNFKDFVAFLSAFSAKASAQQKIELIFKVYDSDRNGKVSFKDMLEVLKDLSGPFMSDEQREEVLSQVLREAGYTKDSYLTLDDFIKVLGQSDLKMDVEVPVD*

>Glyma15g00890.2   sequence type=predicted peptide   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYMHFPYLMDSVCSYLQRLLKMVDGLNFKDFVAFLSAFSAKASAQQKIELIFKVYDSDRNGKVSFKDMLEVLKDLSGPFMSDEQREEVLSQVLREAGYTKDSYLTLDDFIKVLGQSDLKMDVEVPVD*

>Glyma15g00890.3   sequence type=predicted peptide   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPLSQRLLKMVDGLNFKDFVAFLSAFSAKASAQQKIELIFKVYDSDRNGKVSFKDMLEVLKDLSGPFMSDEQREEVLSQVLREAGYTKDSYLTLDDFIKVLGQSDLKMDVEVPVD*

>Glyma15g00890.4   sequence type=predicted peptide   gene model=Glyma15g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPLSQRLLKMVDGLNFKDFVAFLSAFSAKASAQQKIELIFKVYDSDRNGKVSFKDMLEVLKDLSGPFMSDEQREEVLSQVLREAGYTKDSYLTLDDFIKVLGQSDLKMDVEVPVD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain