SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80560 | AT | Annotation by Michelle Graham. TAIR10: isopropylmalate dehydrogenase 2 | chr1:30287833-30290126 FORWARD LENGTH=405 | SoyBase | E_val: 0 | ISS |
| GO:0006744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leucine biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0003862 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-isopropylmalate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG0786 | KOG | 3-isopropylmalate dehydrogenase | JGI | ISS | |
| PTHR11835 | Panther | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE | JGI | ISS | |
| PTHR11835:SF13 | Panther | ISOCITRATE DEHYDROGENASE [NAD] | JGI | ISS | |
| PF00180 | PFAM | Isocitrate/isopropylmalate dehydrogenase | JGI | ISS | |
| UniRef100_I1MCD0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-isopropylmalate dehydrogenase n=1 Tax=Glycine max RepID=I1MCD0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MCD0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: 3-isopropylmalate dehydrogenase n=1 Tax=Glycine max RepID=I1MCD0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g00780 not represented in the dataset |
Glyma15g00780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g44490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g005400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g00780.2 sequence type=transcript gene model=Glyma15g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATTTGATTGTATACTTTAATTGAATAAATAATTTTCTGATGATATATTAAATGAATATGTTAATTGAATAAAAATATTTACTACGTGCATAACCTGGGAAGCCAATTGCCAAACAAAAACTCAGAAAACACAGGGAAAGAAAGAGTTGAGTGATGGCGGCTTGTCTGCAACTGTGGCAATGCAAACTAGCGAGACCCTTTGACTCATTACCGGTGCGAAGGTCAATTCCTTTGAGTCTGAGGTGTTCGGCCGCGCCCTCTTCTTCCAAGCCGACGCGCTCCTACAGCATCACTCTCATCCCCGGCGACGGCATCGGCCCCGAAATCATCTCGGTGGCCAAAGACGTTCTTGTCCTCGCCGGTTATCTCGAAGGGATTAAATACGACTTCCGCGAGATGCTTATGGGTGGAGCTGCATTGGATGCCACGGGACTCCCTTTACCCCATGAAACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTCCTTGGTGCCGTCGGAGGTTATAAATGGGATAGGAACGACAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCGGCTACCGTATACTCTCCGTTAGTTGATGCTTCTACTTTGAAGAGAGAGGTTGCTGAAGGGGTTGATATCATGCTTATAAGAGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGATAATGGTGAAGAGATTGGCTTTAATACTGAGATTTATGCTACACATGAGATAGATCGCATAGCTCATTTTGCATTTAAGGTTGCTCAAAAGCGTCGTCGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGGAAGAGATTTTTGGCAATAGCACAAGAATATCCTGATGTTGAGCTCTCACACATGTATGTTGATAATGCCTCAATGCAACTAATCCGCGATCCAAAACAGTTTGACACCATGGTGACAAACAACATTTTTGGCGATATATTATCAGATGAGGCTTCAATGGTCACTGGAAGTATTGGGATGCTTCCTTCTGCTAGCCTGGGGGCTTCGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCTGGACAGGACAAGGCAAATCCATTTGCCACTGTTCTTAGTGCTGCTATGCTTTTGAGATATGGCCTAGGAGAAGAAAAGGCAGCTGAAAGAATAGAGAATGCAGTGATGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCTGGAACGAAGCTGGTAGGATGCAAACAGCTAGGTGAGGAGATACTGAAGTCAGTTGAATCTAACGTTCCTGCTGGTGCTGCTGCAGTGTGATTTTGAAACCAACTCGCCATAGCATTTTGGGTTCTGGTTTAGGTTGGAGGCCACTATGACTGCCAAAGCCGAGAAAGTCTCCCTAGTCTATTAAGTTCTGGCTTCCTTCTGTATCATGTATTTCGGTTAACACACCCAGCCTATGTATGATTGAATTTTAGAAAGTAGCAAGGTTGTTTATCTTGTATTCTTGTACCCGGGATTCTAGTTTCCCTTGCATGCGAGGTCGCTTGTAATGGTGGAATAATGATTAATGGAGTTTGTCTTGTTAAAAATAAAAAAAAAAGATTTATCAGGTTCAAATTTTTCATAGCCCTTCTGTAAATTGAAGAACTTTTTACGTATAACGTTTGATGGAGCACGGACACTCCAAATGATAAAAATGTTAACATTTCGTC
>Glyma15g00780.1 sequence type=CDS gene model=Glyma15g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCTTGTCTGCAACTGTGGCAATGCAAACTAGCGAGACCCTTTGACTCATTACCGGTGCGAAGGTCAATTCCTTTGAGTCTGAGGTGTTCGGCCGCGCCCTCTTCTTCCAAGCCGACGCGCTCCTACAGCATCACTCTCATCCCCGGCGACGGCATCGGCCCCGAAATCATCTCGGTGGCCAAAGACGTTCTTGTCCTCGCCGGTTATCTCGAAGGGATTAAATACGACTTCCGCGAGATGCTTATGGGTGGAGCTGCATTGGATGCCACGGGACTCCCTTTACCCCATGAAACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTCCTTGGTGCCGTCGGAGGTTATAAATGGGATAGGAACGACAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCGGCTACCGTATACTCTCCGTTAGTTGATGCTTCTACTTTGAAGAGAGAGGTTGCTGAAGGGGTTGATATCATGCTTATAAGAGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGATAATGGTGAAGAGATTGGCTTTAATACTGAGATTTATGCTACACATGAGATAGATCGCATAGCTCATTTTGCATTTAAGGTTGCTCAAAAGCGTCGTCGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGGAAGAGATTTTTGGCAATAGCACAAGAATATCCTGATGTTGAGCTCTCACACATGTATGTTGATAATGCCTCAATGCAACTAATCCGCGATCCAAAACAGTTTGACACCATGGTGACAAACAACATTTTTGGCGATATATTATCAGATGAGGCTTCAATGGTCACTGGAAGTATTGGGATGCTTCCTTCTGCTAGCCTGGGGGCTTCGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCTGGACAGGTTGGTGTCTTTTATTTCCGTTTTTTTTCATTTGCTTCAACCGACATGCTTAACAACAGCACAATTACTCATATACAGGACAAGGCAAATCCATTTGCCACTGTTCTTAGTGCTGCTATGCTTTTGAGATATGGCCTAGGAGAAGAAAAGGCAGCTGAAAGAATAGAGAATGCAGTGATGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCTGGAACGAAGCTGGTAGGATGCAAACAGCTAGGTGAGGAGATACTGAAGTCAGTTGAATCTAACGTTCCTGCTGGTGCTGCTGCAGTGTGA >Glyma15g00780.2 sequence type=CDS gene model=Glyma15g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCTTGTCTGCAACTGTGGCAATGCAAACTAGCGAGACCCTTTGACTCATTACCGGTGCGAAGGTCAATTCCTTTGAGTCTGAGGTGTTCGGCCGCGCCCTCTTCTTCCAAGCCGACGCGCTCCTACAGCATCACTCTCATCCCCGGCGACGGCATCGGCCCCGAAATCATCTCGGTGGCCAAAGACGTTCTTGTCCTCGCCGGTTATCTCGAAGGGATTAAATACGACTTCCGCGAGATGCTTATGGGTGGAGCTGCATTGGATGCCACGGGACTCCCTTTACCCCATGAAACCCTTTCTGCCGCTAAGCAATCTCATGCCGTTCTCCTTGGTGCCGTCGGAGGTTATAAATGGGATAGGAACGACAAACATCTCAAGCCTGAGACTGGCTTGCTTCAGATACGTAAAGAGCTTGGAGTATTTGCAAATCTTAGACCGGCTACCGTATACTCTCCGTTAGTTGATGCTTCTACTTTGAAGAGAGAGGTTGCTGAAGGGGTTGATATCATGCTTATAAGAGAACTCACTGGAGGTATCTATTTTGGAGAACCCAGGGGCTTTGGCACCAATGATAATGGTGAAGAGATTGGCTTTAATACTGAGATTTATGCTACACATGAGATAGATCGCATAGCTCATTTTGCATTTAAGGTTGCTCAAAAGCGTCGTCGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCATCAATGTTATGGAGGAAGAGATTTTTGGCAATAGCACAAGAATATCCTGATGTTGAGCTCTCACACATGTATGTTGATAATGCCTCAATGCAACTAATCCGCGATCCAAAACAGTTTGACACCATGGTGACAAACAACATTTTTGGCGATATATTATCAGATGAGGCTTCAATGGTCACTGGAAGTATTGGGATGCTTCCTTCTGCTAGCCTGGGGGCTTCGGGACCTGGACTTTTTGAACCCATACATGGTTCTGCACCTGATATTGCTGGACAGGACAAGGCAAATCCATTTGCCACTGTTCTTAGTGCTGCTATGCTTTTGAGATATGGCCTAGGAGAAGAAAAGGCAGCTGAAAGAATAGAGAATGCAGTGATGGACACTTTGAACAGGGGATTTCGAACTGGTGACATATATTCTGCTGGAACGAAGCTGGTAGGATGCAAACAGCTAGGTGAGGAGATACTGAAGTCAGTTGAATCTAACGTTCCTGCTGGTGCTGCTGCAGTGTGA
>Glyma15g00780.1 sequence type=predicted peptide gene model=Glyma15g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAACLQLWQCKLARPFDSLPVRRSIPLSLRCSAAPSSSKPTRSYSITLIPGDGIGPEIISVAKDVLVLAGYLEGIKYDFREMLMGGAALDATGLPLPHETLSAAKQSHAVLLGAVGGYKWDRNDKHLKPETGLLQIRKELGVFANLRPATVYSPLVDASTLKREVAEGVDIMLIRELTGGIYFGEPRGFGTNDNGEEIGFNTEIYATHEIDRIAHFAFKVAQKRRRKLCSVDKANVLEASMLWRKRFLAIAQEYPDVELSHMYVDNASMQLIRDPKQFDTMVTNNIFGDILSDEASMVTGSIGMLPSASLGASGPGLFEPIHGSAPDIAGQVGVFYFRFFSFASTDMLNNSTITHIQDKANPFATVLSAAMLLRYGLGEEKAAERIENAVMDTLNRGFRTGDIYSAGTKLVGCKQLGEEILKSVESNVPAGAAAV* >Glyma15g00780.2 sequence type=predicted peptide gene model=Glyma15g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAACLQLWQCKLARPFDSLPVRRSIPLSLRCSAAPSSSKPTRSYSITLIPGDGIGPEIISVAKDVLVLAGYLEGIKYDFREMLMGGAALDATGLPLPHETLSAAKQSHAVLLGAVGGYKWDRNDKHLKPETGLLQIRKELGVFANLRPATVYSPLVDASTLKREVAEGVDIMLIRELTGGIYFGEPRGFGTNDNGEEIGFNTEIYATHEIDRIAHFAFKVAQKRRRKLCSVDKANVLEASMLWRKRFLAIAQEYPDVELSHMYVDNASMQLIRDPKQFDTMVTNNIFGDILSDEASMVTGSIGMLPSASLGASGPGLFEPIHGSAPDIAGQDKANPFATVLSAAMLLRYGLGEEKAAERIENAVMDTLNRGFRTGDIYSAGTKLVGCKQLGEEILKSVESNVPAGAAAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
