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Report for Sequence Feature Glyma15g00645

Feature Type:gene_model
Chromosome:Gm15
Start:368231
stop:372167
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g00645
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80730AT Annotation by Michelle Graham. TAIR10: zinc-finger protein 1 | chr1:30339493-30340179 REVERSE LENGTH=228 SoyBaseE_val: 4.00E-35ISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR10042Panther EARLY GROWTH RESPONSE PROTEIN JGI ISS
PTHR10042:SF14Panther ZFP4 (ZINC FINGER PROTEIN 4), NUCLEIC ACID BINDING JGI ISS
UniRef100_B9SMU5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SMU5_RICCO SoyBaseE_val: 2.00E-55ISS
UniRef100_UPI000233ABB1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233ABB1 related cluster n=1 Tax=unknown RepID=UPI000233ABB1 SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g00645
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g00645 not represented in the dataset
Glyma15g00645 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g00645
ParalogEvidenceComments
Glyma13g44670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g00645 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g004100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g00645
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g00645
>Glyma15g00645.2   sequence type=transcript   gene model=Glyma15g00645   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACAATAAGATATCAGAACTAGCTAGAAGGAAAACACTGTAATATGGGACTTTTCAAACTTCCAATCCCCACAGAATTTGAAGGAAACCCTTGCAAATTTCTTCCTAGATGGACCTTATATTGTCAGAGTCACGTCCATCAGAAAATCTGAGCATTCCATTTTTAGAGACTCCACGTCCATGCTCAAAGCCGCAAGTACCTTCCATGGATACCCAGAAGGAGAAGAAGGAGGAGGACAAAGAACAACCCCATGAGTCTGCTCCACACCTTGCACTACTGGATCTAAGTCTCCCTAGTAAAGATTCAGGCGGTGATGATGATGAGTCAAAGCCACTCAACCTCATCAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCTAGTCATGGACATGGTGATGAATTGGAGCCCCGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGCTCGCAGGCACTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACATTGGCCAAAAGAGGACACAAAGCTGGTGCTGCAGTTTCCATAGATTTTGCACGGAGGTACTCCAACATCAGCATGGCTTCTCTGCCTTTGCATGGTTCCTACAACAGGTCACTTGGCATTCAGGCGCATTCTATGATCAACAAACCCTCTTATCAAACACAAACACCCTTTTCTGGTTTGTCCCGTTCTCATGCTCAGAAGCGGCTTATGTTCTCACAACCGCCAATTGGGGCAGAAAGTGAATCATCTTTGACTGGTGGCATCCCAGTCCCACGGTTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGTTACTGGTTGGATAGTATTAACCATTTGAAGACTAAACAAGAGGATCAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAAGTGCAACCCTCTTCATGTTAAATCGTATCCCGTATTAATTGTCTTTAATTTCTCTTTAATTTGACCAAGAGCTTTTTAGATTTTCTTCTTCTTTGTTTTCTTTGTGTTCATGTATCACTAGTTGCAGCAGCTGTAAATGCATTTTTTAGCCACATACCAGAGTCCGTGTCTTGATATATTATTTGCCTTGATTTGTATTTATGGATTCTTCTGGGTTTATTTGGAAGTTAAAACTTCCCCCGAACTTCATATTTGCTTATTTGTAATAGTATAGCCTATGGAAGC
Coding sequences of Glyma15g00645
>Glyma15g00645.1   sequence type=CDS   gene model=Glyma15g00645   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTTATATTGTCAGAGTCACGTCCATCAGAAAATCTGAGCATTCCATTTTTAGAGACTCCACGTCCATGCTCAAAGCCGCAAGTACCTTCCATGGATACCCAGAAGGAGAAGAAGGAGGAGGACAAAGAACAACCCCATGAGTCTGCTCCACACCTTGCACTACTGGATCTAAGTCTCCCTAGTAAAGATTCAGGCGGTGATGATGATGAGTCAAAGCCACTCAACCTCATCAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCTAGTCATGGACATGGTGATGAATTGGAGCCCCGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGCTCGCAGGCACTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACATTGGCCAAAAGAGGACACAAAGCTGGTGCTGCAGTTTCCATAGATTTTGCACGGAGGTACTCCAACATCAGCATGGCTTCTCTGCCTTTGCATGGTTCCTACAACAGGTCACTTGGCATTCAGGCGCATTCTATGATCAACAAACCCTCTTATCAAACACAAACACCCTTTTCTGGTTTGTCCCGTTCTCATGCTCAGAAGCGGCTTATGTTCTCACAACCGCCAATTGGGGCAGAAAGTGAATCATCTTTGACTGGTGGCATCCCAGTCCCACGGTTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGTTACTGGTTGGATAGTATTAACCATTTGAAGACTAAACAAGAGGATCAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA

>Glyma15g00645.2   sequence type=CDS   gene model=Glyma15g00645   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTTATATTGTCAGAGTCACGTCCATCAGAAAATCTGAGCATTCCATTTTTAGAGACTCCACGTCCATGCTCAAAGCCGCAAGTACCTTCCATGGATACCCAGAAGGAGAAGAAGGAGGAGGACAAAGAACAACCCCATGAGTCTGCTCCACACCTTGCACTACTGGATCTAAGTCTCCCTAGTAAAGATTCAGGCGGTGATGATGATGAGTCAAAGCCACTCAACCTCATCAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCTAGTCATGGACATGGTGATGAATTGGAGCCCCGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGCTCGCAGGCACTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACATTGGCCAAAAGAGGACACAAAGCTGGTGCTGCAGTTTCCATAGATTTTGCACGGAGGTACTCCAACATCAGCATGGCTTCTCTGCCTTTGCATGGTTCCTACAACAGGTCACTTGGCATTCAGGCGCATTCTATGATCAACAAACCCTCTTATCAAACACAAACACCCTTTTCTGGTTTGTCCCGTTCTCATGCTCAGAAGCGGCTTATGTTCTCACAACCGCCAATTGGGGCAGAAAGTGAATCATCTTTGACTGGTGGCATCCCAGTCCCACGGTTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGTTACTGGTTGGATAGTATTAACCATTTGAAGACTAAACAAGAGGATCAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA
Predicted protein sequences of Glyma15g00645
>Glyma15g00645.1   sequence type=predicted peptide   gene model=Glyma15g00645   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLILSESRPSENLSIPFLETPRPCSKPQVPSMDTQKEKKEEDKEQPHESAPHLALLDLSLPSKDSGGDDDESKPLNLINCIDTNLSMNSSESSHGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGAAVSIDFARRYSNISMASLPLHGSYNRSLGIQAHSMINKPSYQTQTPFSGLSRSHAQKRLMFSQPPIGAESESSLTGGIPVPRLGKFSPRLVPEGFGGYWLDSINHLKTKQEDQLHKLDLSLKL*

>Glyma15g00645.2   sequence type=predicted peptide   gene model=Glyma15g00645   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLILSESRPSENLSIPFLETPRPCSKPQVPSMDTQKEKKEEDKEQPHESAPHLALLDLSLPSKDSGGDDDESKPLNLINCIDTNLSMNSSESSHGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGAAVSIDFARRYSNISMASLPLHGSYNRSLGIQAHSMINKPSYQTQTPFSGLSRSHAQKRLMFSQPPIGAESESSLTGGIPVPRLGKFSPRLVPEGFGGYWLDSINHLKTKQEDQLHKLDLSLKL*






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