Glyma15g00620 - SoyBase

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Report for Sequence Feature Glyma15g00620

Feature Type:	gene_model
Chromosome:	Gm15
Start:	355676
stop:	359967
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g00620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80760	AT	Annotation by Michelle Graham. TAIR10: NOD26-like intrinsic protein 6;1 \| chr1:30350640-30352015 REVERSE LENGTH=305	SoyBase	E_val: 1.00E-161	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0046713	GO-bp	Annotation by Michelle Graham. GO Biological Process: borate transport	SoyBase	N/A	ISS
GO:0080029	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to boron-containing substance levels	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerol transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015204	GO-mf	Annotation by Michelle Graham. GO Molecular Function: urea transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
GO:0046715	GO-mf	Annotation by Michelle Graham. GO Molecular Function: borate transmembrane transporter activity	SoyBase	N/A	ISS
KOG0223	KOG	Aquaporin (major intrinsic protein family)	JGI		ISS
PTHR19139	Panther	AQUAPORIN TRANSPORTER	JGI		ISS
PTHR19139:SF22	Panther	gb def: glycerol uptake facilitator protein [mycoplasma pulmonis]	JGI		ISS
PF00230	PFAM	Major intrinsic protein	JGI		ISS
UniRef100_I1MCB4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MCB4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6J1S8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulin 26-like protein n=1 Tax=Medicago truncatula RepID=Q6J1S8_MEDTR	SoyBase	E_val: 4.00E-175	ISS

Expression Patterns of Glyma15g00620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g00620

Paralog	Evidence	Comments
Glyma13g44681	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g00620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g003900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g00620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g00620

Limit To All Plant Sequences

>Glyma15g00620.1   sequence type=CDS   gene model=Glyma15g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAATAACGAGGAAATACCCTCAACACCCGCAACACCAGGCACTCCTGGTGCACCTCTTTTTGGTGGCTTCAGTAATGGTAGGAACAATAATAGCAAGAAGTCCCTCCTGAAGAGTTGTAGGTGCTTCAGTGTGGAGGAGTGGAGCTTAGAAGATGGAGGGCTACCGGCAGTGTCATGCTCATTGCCACTGCCATCGCCTCCACCGGTAGTCCCTCTTGCAAGAAAGATTGGAGCGGAGTTCATAGGGACCTTCATCCTCATGTTCGCAGGCACTGCCGCTGCCATTGTCAACCAAAAGACAAATGGCTCTGAGACCCTTATTGGATGTGCTGCCACCACTGGTCTCGCCGTCATGATCGTGATCCTCGCCACCGGCCACATCTCCGGTGCTCATCTCAACCCTGCTGTCACCATTTCCTTCGCTGCATTAAAGCACTTCCCTTGGAAGCATGTGCCCATGTATATTGGTGCACAAGTTTTGGCATCTATATGCGCCGGATTTGCTCTCAAGGGGGTTTATCACCCTTTCATGAGTGGAGGAGTCACCGTTCCTTCCGGAGGATACGGCCAATCTTTTGCTTTGGAGTTCATTATTGGCTTCAACCTCATGTTCGTTGTCACTGCAGTCGCCACCGACACCAGAGCTGTGGGAGAACTCGCGGGAATCGCGGTGGGAGCGACTGTGATGCTCAATATACTCATAGCAGGGCCAGTATCCGGGGGCTCAATGAACCCAGTAAGAACACTAGGTCCTGCTGTGGCGGCAAACAACTACAAAGCCATATGGGTCTATCTAGTAGCTCCCATACTTGGAGCTTTAGCTGGGGCAGGTACCTACACTGCAGTGAAGCTGCCTGAAGAAGATGATGACGCCAAGGCAAAGACTTCAATCAGCAGCTTCAGAAGGTGA

Predicted protein sequences of Glyma15g00620

Limit To All Plant Sequences

>Glyma15g00620.1   sequence type=predicted peptide   gene model=Glyma15g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNNEEIPSTPATPGTPGAPLFGGFSNGRNNNSKKSLLKSCRCFSVEEWSLEDGGLPAVSCSLPLPSPPPVVPLARKIGAEFIGTFILMFAGTAAAIVNQKTNGSETLIGCAATTGLAVMIVILATGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVLASICAGFALKGVYHPFMSGGVTVPSGGYGQSFALEFIIGFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAVAANNYKAIWVYLVAPILGALAGAGTYTAVKLPEEDDDAKAKTSISSFRR*

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