Glyma15g00600 - SoyBase

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Report for Sequence Feature Glyma15g00600

Feature Type:	gene_model
Chromosome:	Gm15
Start:	331560
stop:	336999
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g00600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15950	AT	Annotation by Michelle Graham. TAIR10: cinnamoyl coa reductase 1 \| chr1:5478855-5481915 FORWARD LENGTH=344	SoyBase	E_val: 4.00E-176	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cinnamoyl-CoA reductase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_C6TE08	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TE08_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E3NZI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cinnamoyl-CoA reductase 4 n=1 Tax=Gossypium hirsutum RepID=E3NZI6_GOSHI	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g00600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g00600

Paralog	Evidence	Comments
Glyma13g44700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g00600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g003600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g00600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g00600

Limit To All Plant Sequences

>Glyma15g00600.2   sequence type=transcript   gene model=Glyma15g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGGCGTAGTAGTGGTGGGTTAGGTTAGGTGACTGGGGTTTCCTATAAAAGGCATAGCGCATATCTCCGTCAGCATTAGCATCTATCTCACTAACCAACTTCTTTCTTTGTTCCGTTCTACTTTCCCTTCCCAACAACAACAAGAAGATGCCTTCTGCAGAAGCTTCCTCCGAAACCATTTGTGTCACCGGCGCTGGTGGCTTCATCGCCTCTTGGATGGTCAAACTCCTCTTGGAAAAAGGCTACACTGTCCGAGGAACCCTCAGAAATCCAGGCATCGTCTATCTCAACTACACACGCACACTCTCTCTCTCTCTCTATTAATATTAAATTTGAATTTTATTTAGCTATATGACGTGAGGTGGGGGCATGCATGAACTGAATTTTGGTTTTCAGATGATCCCAAGAACGGGCACTTGAAGGAGTTTGAAGGAGCCTCCGAGAGGTTAACTCTGCATAAGGTTGACCTCCTTCATCTTGACTCCGTTAGATCAGTTATTAACGGTTGCCATGGTGTCTTTCACACTGCTTCTCCCGTCACCGATAACCCCGAAGAAATGGTGGAGCCAGCGGTGAGTGGAGCTAAGAATGTGATCATAGCTGCTGCAGAGGCTAAAGTTAGACGTGTGGTGTTCACCTCATCCATTGGTGCCGTCTATATGGACCCCAGTAGGAGCATCGATTTGGTGGTTGACGAGTCCTGTTGGAGTGATTTGGAATATTGCAAGAACACCAAGAATTGGTATTGCTATGGGAAGGCTGTGGCTGAACAAGCAGCATGGGACACAGCAAAAGAGAATGGGGTGGACTTGGTTGTAGTGAACCCAGTTTTGGTTCTTGGACCATTACTGCAGCCCACAATCAATGCTAGTACAATTCACATCCTCAAGTACCTCACTGGCTCTGCTAAGACCTATGCAAATGCCACACAGGCTTATGTGCATGTTAGGGATGTGGCATTGGCCCACATACTTGTTTATGAGAAGCCTTCTGCCTCTGGTAGATACCTATGTGCCGAAAGCTCCCTCCACCGTGGAGAATTAGTTGAAATTCTCGCCAAGTATTTCCCGGAGTACCCAGTTCCCACCAAGTGTTCAGATGAAAAGAATCCGAGAGCAAAACCCTACACTTTTTCAAATCAAAAGCTGAAAGATTTGGGATTGGAATTCACTCCAGTGAGTCAGTGTCTATATGAAACAGTGAAGAGCCTGCAGGAGAAAGGCCACCTTCCAGTTCCTGCAAAGCAGCAGGAAGAAGATTCAACTACCGTGAAATCCTAAATGAGCAGCTAGTTGTCCACTAAGGCAAGAAGCTGCAGCTTGTGGCAATCTGTGCTCATCTTATATATTATAATAGAGAATCCTACATTAGAAGACTGCTGTATTTGGATTTTGTTAAAAAGACATCAACTAAATTGTTGCCGTGTATGAACTTATAATATTAATGAAATTTATTCCCCTCGTTGAGTTGAATTATTCTGTTCCTCAAGCTCTTCTATCTCTCTTAAAAGAAATTGTATTCTTTAATATTTGTTAAATAACATTATGCCATGCAA

Coding sequences of Glyma15g00600

Limit To All Plant Sequences

>Glyma15g00600.1   sequence type=CDS   gene model=Glyma15g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTGCAGAAGCTTCCTCCGAAACCATTTGTGTCACCGGCGCTGGTGGCTTCATCGCCTCTTGGATGGTCAAACTCCTCTTGGAAAAAGGCTACACTGTCCGAGGAACCCTCAGAAATCCAGATGATCCCAAGAACGGGCACTTGAAGGAGTTTGAAGGAGCCTCCGAGAGGTTAACTCTGCATAAGGTTGACCTCCTTCATCTTGACTCCGTTAGATCAGTTATTAACGGTTGCCATGGTGTCTTTCACACTGCTTCTCCCGTCACCGATAACCCCGAAGAAATGGTGGAGCCAGCGGTGAGTGGAGCTAAGAATGTGATCATAGCTGCTGCAGAGGCTAAAGTTAGACGTGTGGTGTTCACCTCATCCATTGGTGCCGTCTATATGGACCCCAGTAGGAGCATCGATTTGGTGGTTGACGAGTCCTGTTGGAGTGATTTGGAATATTGCAAGAACACCAAGAATTGGTATTGCTATGGGAAGGCTGTGGCTGAACAAGCAGCATGGGACACAGCAAAAGAGAATGGGGTGGACTTGGTTGTAGTGAACCCAGTTTTGGTTCTTGGACCATTACTGCAGCCCACAATCAATGCTAGTACAATTCACATCCTCAAGTACCTCACTGGCTCTGCTAAGACCTATGCAAATGCCACACAGGCTTATGTGCATGTTAGGGATGTGGCATTGGCCCACATACTTGTTTATGAGAAGCCTTCTGCCTCTGGTAGATACCTATGTGCCGAAAGCTCCCTCCACCGTGGAGAATTAGTTGAAATTCTCGCCAAGTATTTCCCGGAGTACCCAGTTCCCACCAAGTGTTCAGATGAAAAGAATCCGAGAGCAAAACCCTACACTTTTTCAAATCAAAAGCTGAAAGATTTGGGATTGGAATTCACTCCAGTGAGTCAGTGTCTATATGAAACAGTGAAGAGCCTGCAGGAGAAAGGCCACCTTCCAGTTCCTGCAAAGCAGCAGGAAGAAGATTCAACTACCGTGAAATCCTAA

>Glyma15g00600.2   sequence type=CDS   gene model=Glyma15g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGCCAGCGGTGAGTGGAGCTAAGAATGTGATCATAGCTGCTGCAGAGGCTAAAGTTAGACGTGTGGTGTTCACCTCATCCATTGGTGCCGTCTATATGGACCCCAGTAGGAGCATCGATTTGGTGGTTGACGAGTCCTGTTGGAGTGATTTGGAATATTGCAAGAACACCAAGAATTGGTATTGCTATGGGAAGGCTGTGGCTGAACAAGCAGCATGGGACACAGCAAAAGAGAATGGGGTGGACTTGGTTGTAGTGAACCCAGTTTTGGTTCTTGGACCATTACTGCAGCCCACAATCAATGCTAGTACAATTCACATCCTCAAGTACCTCACTGGCTCTGCTAAGACCTATGCAAATGCCACACAGGCTTATGTGCATGTTAGGGATGTGGCATTGGCCCACATACTTGTTTATGAGAAGCCTTCTGCCTCTGGTAGATACCTATGTGCCGAAAGCTCCCTCCACCGTGGAGAATTAGTTGAAATTCTCGCCAAGTATTTCCCGGAGTACCCAGTTCCCACCAAGTGTTCAGATGAAAAGAATCCGAGAGCAAAACCCTACACTTTTTCAAATCAAAAGCTGAAAGATTTGGGATTGGAATTCACTCCAGTGAGTCAGTGTCTATATGAAACAGTGAAGAGCCTGCAGGAGAAAGGCCACCTTCCAGTTCCTGCAAAGCAGCAGGAAGAAGATTCAACTACCGTGAAATCCTAA

Predicted protein sequences of Glyma15g00600

Limit To All Plant Sequences

>Glyma15g00600.1   sequence type=predicted peptide   gene model=Glyma15g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSAEASSETICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKEFEGASERLTLHKVDLLHLDSVRSVINGCHGVFHTASPVTDNPEEMVEPAVSGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPSRSIDLVVDESCWSDLEYCKNTKNWYCYGKAVAEQAAWDTAKENGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPVPTKCSDEKNPRAKPYTFSNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPVPAKQQEEDSTTVKS*

>Glyma15g00600.2   sequence type=predicted peptide   gene model=Glyma15g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEPAVSGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPSRSIDLVVDESCWSDLEYCKNTKNWYCYGKAVAEQAAWDTAKENGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPVPTKCSDEKNPRAKPYTFSNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPVPAKQQEEDSTTVKS*

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