SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g00390

Feature Type:gene_model
Chromosome:Gm15
Start:190504
stop:194042
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g00390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G21240AT Annotation by Michelle Graham. TAIR10: 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556 SoyBaseE_val: 0ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009411GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009698GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process SoyBaseN/AISS
GO:0009805GO-bp Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016207GO-mf Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity SoyBaseN/AISS
KOG1176 KOG Acyl-CoA synthetase JGI ISS
PTHR24096Panther FAMILY NOT NAMED JGI ISS
PTHR24096:SF43Panther SUBFAMILY NOT NAMED JGI ISS
PF00501PFAM AMP-binding enzyme JGI ISS
UniRef100_I1MC91UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MC91_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8W558UniRef Annotation by Michelle Graham. Most informative UniRef hit: 4-coumarate:CoA ligase n=1 Tax=Amorpha fruticosa RepID=Q8W558_9FABA SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g00390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g00390
ParalogEvidenceComments
Glyma13g44950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g00390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g001700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g00390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g00390
>Glyma15g00390.1   sequence type=CDS   gene model=Glyma15g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTTGTTGAAAGAAGGAGGGAATTGATATTCAGGTCGAAGCTTCCGGATATCTACATCCCCAAACACCTTCCCCTCCACACATACTGCTTCGAGAATTTGCCAGAGTACGGTGCACGCCCCTGCTTGATCAATGCCCCCACGGGAGACGTCTACAGCTACGAGGAGGTGGAAAGCACCGCCAGAAAGGTGGCGCGGGGGCTGAAGAAAGAGGGCGTGGAACAGGGCCAGGTCATCATGATCCTCCTCCCCAATTGCCCCGAATTCGTCTTCTCGTTTCTTGGCGCATCCCACCGCGGTGCCATGGCCACTGCTGCCAACCCTTTCTTCACCCCCGCCGAGATTGCAAAGCAAGCCCATGCCTCCAATGCCAAGCTCCTCATCACCCAGGCCTCTTACTACGACAAAGTCAAGGACCTCCGCCACATCAAGCTCGTATTCGTCGACTCTTGTCCCCCCCAGCATCTCCATTTCTCACAGCTGTGTGAGGATAATGGTGACGCTGATGTTGATATCAAGCCCGATGACGTGGTTGCATTGCCTTATTCTTCGGGAACAACTGGTCTTCCCAAGGGAGTGATGCTGAGCCACAAGGGGTTGGTGACCAGCATTGCTCAGCAGGTTGACGGTGATAATCCCAACCTCTATTACCACTGCCACGACACCATCCTCTGCGTGCTTCCCCTCTTTCACATTTACTCTCTCAACTCCGTTCTTCTCTGTGGCTTGCGTGCCAAGGCTACCATTCTCCTCATGCCCAAGTTCGATATTAACTCCTTGCTTGCTCTCATTCACAAGCACAAAGTCACTATTGCCCCTGTCGTCCCTCCCATTGCTCTCGCCATCTCCAAATCACCCGATCTCCACAATTACGACCTGTCTTCCATCAGAGTCTTCAAGTCCGGGGGAGCCCCTCTCGGTAAGGAACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTTGCTAGAGAACCGATAGACGTAAAACCAGGTGCATGTGGAACCGTTGTAAGAAATGCAGAGTTGAAGATTGTCGATCCTGAAACCGGTCATTCTTTACCCAGAAACCACTCCGGCGAAATTTGCATACGAGGCGACCAGATTATGAAAGGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTGGTTGCACACAGGTGACATCGGTTACATCGACGATGACGATGAGTTATTCATCGTTGACAGGCTCAAGGAATTAATCAAATACAAAGGATTTCAAGTGGCTCCAGCTGAACTTGAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCCAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATCAAATGGTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGCAAGGATCTAAGAGCAAAGCTAACAGCAACTGTTCCAACATGA
Predicted protein sequences of Glyma15g00390
>Glyma15g00390.1   sequence type=predicted peptide   gene model=Glyma15g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVVERRRELIFRSKLPDIYIPKHLPLHTYCFENLPEYGARPCLINAPTGDVYSYEEVESTARKVARGLKKEGVEQGQVIMILLPNCPEFVFSFLGASHRGAMATAANPFFTPAEIAKQAHASNAKLLITQASYYDKVKDLRHIKLVFVDSCPPQHLHFSQLCEDNGDADVDIKPDDVVALPYSSGTTGLPKGVMLSHKGLVTSIAQQVDGDNPNLYYHCHDTILCVLPLFHIYSLNSVLLCGLRAKATILLMPKFDINSLLALIHKHKVTIAPVVPPIALAISKSPDLHNYDLSSIRVFKSGGAPLGKELEDTLRAKFPNAKLGQGYGMTEAGPVLTMSLAFAREPIDVKPGACGTVVRNAELKIVDPETGHSLPRNHSGEICIRGDQIMKGYLNDGEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVISNGYTDTTQDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLTATVPT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo