Report for Sequence Feature Glyma15g00340
Feature Type: gene_model
Chromosome: Gm15
Start: 133259
stop: 151232
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g00340
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G21180 AT
Annotation by Michelle Graham. TAIR10: autoinhibited Ca(2+)-ATPase 9 | chr3:7425770-7431941 FORWARD LENGTH=1086
SoyBase E_val: 0 ISS
GO:0006754 GO-bp
Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process
SoyBase N/A ISS
GO:0006812 GO-bp
Annotation by Michelle Graham. GO Biological Process: cation transport
SoyBase N/A ISS
GO:0006816 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium ion transport
SoyBase N/A ISS
GO:0006882 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular zinc ion homeostasis
SoyBase N/A ISS
GO:0007338 GO-bp
Annotation by Michelle Graham. GO Biological Process: single fertilization
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009555 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen development
SoyBase N/A ISS
GO:0009624 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nematode
SoyBase N/A ISS
GO:0009827 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification
SoyBase N/A ISS
GO:0009860 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube growth
SoyBase N/A ISS
GO:0010584 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen exine formation
SoyBase N/A ISS
GO:0048610 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction
SoyBase N/A ISS
GO:0048868 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube development
SoyBase N/A ISS
GO:0070588 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium ion transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0005388 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calcium-transporting ATPase activity
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0015662 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
SoyBase N/A ISS
GO:0046872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion binding
SoyBase N/A ISS
KOG0204
KOG
Calcium transporting ATPase
JGI ISS
PTHR24093 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24093:SF73 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00122 PFAM
E1-E2 ATPase
JGI ISS
PF00689 PFAM
Cation transporting ATPase, C-terminus
JGI ISS
PF00690 PFAM
Cation transporter/ATPase, N-terminus
JGI ISS
PF00702 PFAM
haloacid dehalogenase-like hydrolase
JGI ISS
PF12515 PFAM
Ca2+-ATPase N terminal autoinhibitory domain
JGI ISS
UniRef100_B9HK60 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9HK60_POPTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233C15C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C15C related cluster n=1 Tax=unknown RepID=UPI000233C15C
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g00340
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g00340
Paralog Evidence Comments
Glyma13g44990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g00340 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g001300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g00340
Coding sequences of Glyma15g00340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g00340.1 sequence type=CDS gene model=Glyma15g00340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCAACGTTAACATAGCCTCCACCTCGCGTGGTTCCACCTCCTCCTCCAATGGCCTTCTCACCGTCACCATTACCAGCACCAGCCACCCTGACGACCCTCCCACCGACGACAACGATGACGACGACTTGCTCGCTGATCCGGACGATCCTTTCGATATTACGCATACCAAAAATGCACCTCCCGAGGCCCTCAAGCGTTGGAGACAAGCAGCTTTCGTGCTCAATGCGTCCAGGCGTTTTAGGTACACTCTTGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATTAGATCCCACGCACAAGTCATCAGAGCAGCATTGCTTTTCAGATTGGCTGGTGAACGGGAACTAGTGACAAGTAAAGCAGCAGTGGCATCCCCATCTCCAGTTGGTGAATATACAGTTGGGCTCGAACAACTTGTTTCAATGACTAAGAATCAGAATATTTCTGCTTTACAACAATACGGAGGGGTTAAAGGCTTATCAAATTTACTAAAATCAAATCCGGATAAGGGGATTAGTGGAGATGATGTTGATCTATCAAAGAGGAAAAATGCATTTGGAACTAATACATACCCTCGGAAAAAGGGGAGAAGTTTCTGGAGGTTTCTATGGGAATCTTGGCAAGATCTGACTCTTATAATATTGATTATAGCAGCTGTAGTGTCGTTGGTACTTGGAATAAAAACAGAGGGCTTGGAAGAAGGGTGGTACGACGGGGGCAGCATTGCTTTCGCTGTTTTTCTTGTCATTATAGTTACAGCTGTCAGTGATTATCGGCAATCTTTGCAGTTTCAGAATTTAAATGCAGAGAAACAAAATATAAAATTGGAGGTCATTAGAGGTGGCAGAACAATACAAATATCCATATTTGATATTGTTGTTGGTGATTTAGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTTGTAATCACTGGTCACTCGCTTGCCATTGATGAATCGAGTATGACTGGTGAAAGCAAGATTATTCACAAGGATCAAAAAGCACCTTTTTTGATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGCTATGCTGGTAACTGGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTTCGTTTGAATGGAGTAGCAACTTTTATTGGCATAGTTGGGCTTACTGTAGCTGTTTGTGTACTTGCAGTCCTCTTGGGAAGATATTTCTCTGGCCATACGAAAGATTTAGATGGAAGAGTACAATTTGTTGCTGGAGAGACTAGTATTAGCGAAGCAGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTGGTTGCAGTGCCCGAAGGTCTACCTTTAGCAGTTACCTTAACCTTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCAGCATGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATGTGTTGGAAGGAAGAAACTAAACCCACCAGATGACTTGACAAAATTGCATCCGGAAGTTTTATCTTTGATAAATGAGGGCATTGCACAAAATACAACTGGCAATGTTTTTGTGCCTAAGGATGGTGGAGAGGTGGAGGTTTCAGGGTCTCCTACGGAGAAAGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAATTTTGATCTTATTAGATCAAATTCAACAATTCTACACGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGAGGCCTTGCTCTGAAACTGCCGGACTCTGCAGTACATATACATTGGAAAGGAGCTGCGGAGATAGTTTTAGGAACATGTACTCAATATCTTGATTCTGATGGTCACTTGAAATCTATTGAAGAAGAGAAGGTATTCTTCAAGAACTCTATCGAAGACATGGCTGCTCAGAGCTTGCGTTGTGTTGCCATTGCATACAGATCGTATGATTTAGACAAAATTCCATCAAATGAGGAGGAATTAGACCAGTGGTCCTTACCTGAACACGAGCTTGTCTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAGGATGCTGTGAAAATATGCACCGAAGCCGGTGTTAAGGTACGGATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTTGAGTGTGGAATACTGATGTCAAATGATGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAAAGGAAAGGGAACAAGTTGCAAAAAAGATAACAGTTATGGGGAGGTCTTCTCCTACTGACAAGCTGTTGCTCGTGCAAGCACTACGTACAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATAATCTTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATTCAGTTCCAGCTCACTGTTAATGTAGCTGCTCTTGTAATAAATGTTGTGGCCGCAATATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGCTTTTGTGGGTCAACGTTATCATGGACACACTTGGGGCTCTTGCACTGGCTACGGAACCGCCAACAGACAACCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACAAATGTCATGTGGAGGAACTTGGGCGTACAGGCTCTCTATCAAGTCACTGTCCTTCTCGTTCTTAACTTCGGTGGTGAAAGTATTCTACGTAATGATCAGGATTCTGTAGCCCATACCATACAAGTGAAGAATACTTTAATTTTCAATGCATTCGTCTTTTGCCAAATATTCAACGAGTTCAATGCTCGAAAACCAGAAGAGATGAATGTCTTCCGGGGAGTGACTAAGAACGGTCTCTTCATGGGAATTGTTGGAATGACCTTCGTGCTTCAGATAATCATAATAGAGTTCCTTGGAAAATTCACAACGACAGTGAAGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTTGTATTGGGCTTTTAAGCTGGCCTCTTGCGATAATTGGAAAATTCATTCCAGTTCCCAAAACACCACTGTCCCGATATTTCAGGAGATTCAGCAAGTCCAAGTCGCAATAG
Predicted protein sequences of Glyma15g00340
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g00340.1 sequence type=predicted peptide gene model=Glyma15g00340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSNVNIASTSRGSTSSSNGLLTVTITSTSHPDDPPTDDNDDDDLLADPDDPFDITHTKNAPPEALKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRSHAQVIRAALLFRLAGERELVTSKAAVASPSPVGEYTVGLEQLVSMTKNQNISALQQYGGVKGLSNLLKSNPDKGISGDDVDLSKRKNAFGTNTYPRKKGRSFWRFLWESWQDLTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNAEKQNIKLEVIRGGRTIQISIFDIVVGDLVPLKIGDQVPADGVVITGHSLAIDESSMTGESKIIHKDQKAPFLMSGCKVADGVGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVCVLAVLLGRYFSGHTKDLDGRVQFVAGETSISEAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGRKKLNPPDDLTKLHPEVLSLINEGIAQNTTGNVFVPKDGGEVEVSGSPTEKAILSWAVKLGMNFDLIRSNSTILHVFPFNSEKKRGGLALKLPDSAVHIHWKGAAEIVLGTCTQYLDSDGHLKSIEEEKVFFKNSIEDMAAQSLRCVAIAYRSYDLDKIPSNEEELDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKICTEAGVKVRMVTGDNLQTAKAIAFECGILMSNDDAVEPNIIEGKTFRELSEKEREQVAKKITVMGRSSPTDKLLLVQALRTGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNVIMDTLGALALATEPPTDNLMHRSPVGRREPLITNVMWRNLGVQALYQVTVLLVLNFGGESILRNDQDSVAHTIQVKNTLIFNAFVFCQIFNEFNARKPEEMNVFRGVTKNGLFMGIVGMTFVLQIIIIEFLGKFTTTVKLDWKLWLASLCIGLLSWPLAIIGKFIPVPKTPLSRYFRRFSKSKSQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
