SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38900 | AT | Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547 | SoyBase | E_val: 9.00E-99 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR13301 | Panther | X-BOX TRANSCRIPTION FACTOR-RELATED | JGI | ISS | |
| PTHR13301:SF13 | Panther | TRANSCRIPTIONAL ACTIVATOR HACA | JGI | ISS | |
| PF00170 | PFAM | bZIP transcription factor | JGI | ISS | |
| UniRef100_G7I6G4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP11 n=1 Tax=Medicago truncatula RepID=G7I6G4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MC59 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MC59_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma14g40580 not represented in the dataset |
Glyma14g40580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g37510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g217200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g40580.2 sequence type=transcript gene model=Glyma14g40580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCGAAAATAAAGGAAAAAAGAAACAATATCCGCGTCCCACCGAAGATGACTCGCGCAGAGAGAAGAAAGAACGAACAATTTTAGCTTCAAACACACACAAACACATCGTCATCATCTTCATCACTCTCCGACACTTGAAACTCTCATGTTGTTCCTCTAGAAACCTCTTCCGCACCACCGTGGAATTTTCCTGCTCCTTTTGCACAAAACACACACTCTGCTTCTATTATAATTCATGCTTGTCCTTGTCCTTGTCCTTGTGCTGGTTTTTTTCTAGATAGGGTTTGCACTTTTTAATCAGAACTAGCCAAGACCAGGTACAGAAAGTACTGTGTTAGTTAAAAAAAAAAAAACTTTCATCAATTATTATCAACTTTATTCGGTAGTGTAGCCTTGTAGGTGAACTATGTGTCAGGATTTTGAAGTTTGATTCTCTTTTATATTGATTGAATAGTTGTGTGTAGAAACTAGAAAGGTTAGTGATTATTATTGAGTCAATGGAAGGTGTTGATCAGAGTAATATGAATCGAAATAGTTGTGTATTTGGTTCATCTTCATCTTCATCATCAGGGGGTGCTCTTAGACCCCCAAATCGATTGAATAGTAATGTTATGCTTATTAATCAAATGGGTGTTACTGAGAACCAGAAACCCTATGGTATACCACCCTCACACCCTAATACCAATATTTCACCTTCATCAGCTTATCCTCAGTTTTTTGCCTCCCAATCCCAATCCAATTCGGTTTCCCAGCGTTTGAGTTCTCCCAATTTGAGTCCTGCTTCGTCCCATTCCAGGTCTTTGTCTCAGCCCTCTTTTTTCTCTCTGGATTCCTTGCCCCCATTGAGTCCTTCCCCTTATAAAGAACCTTCCTTTTCTGACTCAATTTCGACTGATGTGTCTGCTGAGGAAAGCTTGGCTAACTCTCATGCCCCCTTGCCGAATCGTGGCCACGCTCTTCAGCTTGGCCATTCTCTTCCTCCTCGTAAAGGACATAGGCGCTCTAGCAGTGATTCCCCTTTAGGAATTGCTGATTTTATTCAGTCTGTCCCTCAGTCTGTTTCCTCTAAGACTTGGAGCGACCGTGAAAATTTGGCTTCTAGGGGAGGGAACTCTGGTTTTGAGAAGCCGATTCAGTTAGTGTTAAAGGAACCAATGAAGGATATGGACTGCGTTGATGGCTTTGGTGGAGAACCTATGGTTGGGAGGAAAGAGGATGATGCACTGGATGATTTGTTTAGTGCATATATGAATTTGGACAATATTGATGGCCTGAATTTTTCTGGTATGGAAGACAAGGATTTGGATAGCAGAACTAGTGGTTCAAAAACAGTTGAGAGCAGTGATAATGAAGTTGAGAGTCATGCATATGGCAAAGTGATTGGTGCTCAAGGGGCTATTTCACGCTGTTCTGAAGAGAGGAGGGAAGGAGTGAAGAGGAGTTCTAATGGAGACGTTGCACCTGGTTCCCGACACCGGAGAAGTTTCTCATTGGACAGCTCCATAGGAAATTTTCATATTGGAGATGAATTGCCTAAGCTTCCTCCTTCGCAGAACCGATTTGGTCAACACTCGCCTAGCAGTTCAATAGATGGTAAGACATCTGAAACAAGCATGGAGTTTGGAAATGGTGAATTCAGCTCAGAGGAGCTAAAGAAAATAAAGGAGAACGATAAACTTGCTGAAATTGCCATGGCTGATCCTAAGCGTGCAAAAAGGATTTTGGCTAATCGTCTATCAGCTGCTCGCTCAAAAGAGAGGAAGATGCGGTACATTTCTGAATTAGAGCTCAAAGTTCAAACACTTCAGACTGAGACAACCACATTGTCTACTCAGTTTACCAAATTACAGATGAATAATTCAGAGCTTAAAAGTGAGAATAATGAGTACAAATTAAGGATTCAAGCCTTGGAACAGCAGTCCCAACTGAAAGATGGTATGGATATGCATTTTTCATCTACTTTGTGTATTAGCTCAAATCTGCTTTAGCTTGTTCCACCCTATAAAGTGTGAACTTTGTCAATTTTATTCAGAAATAACTTGTATTTATGATCTGCTTCAATGATGTCTTATTTTCATTTAGTAAATGAATTTTGTGTGATAACTAGGTTTACTGTATGGCATTTTTTGAATGTGTATTCGCAAATTAATCAAACTTGTGCTGGCTCTCATAATCTAAATGGCTGATGTTAATTAACTAAAACTCGAGTGACTTTCTATCCAATTTTTTGATCTCTGCACAACTGTGCCTCTGAAATCTACCTGTCTGATCTAGGAATTTGATTTCATGTTGGCAAATGCTTGTAAATTTGGAACCCAAGTACATTTGCACTAGTACCATGTTTTTCTGAAGTTCTCGTTTGCACAGCCTCTTTAAAACTGTATATGAAAAAATGTCAGTGTAATTTTGCCTACATAGATGGTGTCACTTAAATGCTCTTAATTGCCAAAATAGAAAGAAAAG
>Glyma14g40580.1 sequence type=CDS gene model=Glyma14g40580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGTGTTGATCAGAGTAATATGAATCGAAATAGTTGTGTATTTGGTTCATCTTCATCTTCATCATCAGGGGGTGCTCTTAGACCCCCAAATCGATTGAATAGTAATGTTATGCTTATTAATCAAATGGGTGTTACTGAGAACCAGAAACCCTATGGTATACCACCCTCACACCCTAATACCAATATTTCACCTTCATCAGCTTATCCTCAGTTTTTTGCCTCCCAATCCCAATCCAATTCGGTTTCCCAGCGTTTGAGTTCTCCCAATTTGAGTCCTGCTTCGTCCCATTCCAGGTCTTTGTCTCAGCCCTCTTTTTTCTCTCTGGATTCCTTGCCCCCATTGAGTCCTTCCCCTTATAAAGAACCTTCCTTTTCTGACTCAATTTCGACTGATGTGTCTGCTGAGGAAAGCTTGGCTAACTCTCATGCCCCCTTGCCGAATCGTGGCCACGCTCTTCAGCTTGGCCATTCTCTTCCTCCTCGTAAAGGACATAGGCGCTCTAGCAGTGATTCCCCTTTAGGAATTGCTGATTTTATTCAGTCTGTCCCTCAGTCTGTTTCCTCTAAGACTTGGAGCGACCGTGAAAATTTGGCTTCTAGGGGAGGGAACTCTGGTTTTGAGAAGCCGATTCAGTTAGTGTTAAAGGAACCAATGAAGGATATGGACTGCGTTGATGGCTTTGGTGGAGAACCTATGGTTGGGAGGAAAGAGGATGATGCACTGGATGATTTGTTTAGTGCATATATGAATTTGGACAATATTGATGGCCTGAATTTTTCTGGTATGGAAGACAAGGATTTGGATAGCAGAACTAGTGGTTCAAAAACAGTTGAGAGCAGTGATAATGAAGTTGAGAGTCATGCATATGGCAAAGTGATTGGTGCTCAAGGGGCTATTTCACGCTGTTCTGAAGAGAGGAGGGAAGGAGTGAAGAGGAGTTCTAATGGAGACGTTGCACCTGGTTCCCGACACCGGAGAAGTTTCTCATTGGACAGCTCCATAGGAAATTTTCATATTGGAGATGAATTGCCTAAGCTTCCTCCTTCGCAGAACCGATTTGGTCAACACTCGCCTAGCAGTTCAATAGATGGTAAGACATCTGAAACAAGCATGGAGTTTGGAAATGGTGAATTCAGCTCAGAGGAGCTAAAGAAAATAAAGGAGAACGATAAACTTGCTGAAATTGCCATGGCTGATCCTAAGCGTGCAAAAAGGATTTTGGCTAATCGTCTATCAGCTGCTCGCTCAAAAGAGAGGAAGATGCGGTACATTTCTGAATTAGAGCTCAAAGTTCAAACACTTCAGACTGAGACAACCACATTGTCTACTCAGTTTACCAAATTACAGATGAATAATTCAGAGCTTAAAAGTGAGAATAATGAGTACAAATTAAGGATTCAAGCCTTGGAACAGCAGTCCCAACTGAAAGATGCTCTGAATGAGACCTTGGATGCTGAAGTGCGGCGTTTAAGATGCACGGTCGCAGAACTTGGTGGAGAGTCTCTTCTCTCAAGTCGCATGGCTCAACAGCTTGCTATTAGCCAACAAGTGTTTCAGTTAAAGGAACAGCAGCACCCTAACCAGCTTAGACATGTTCAAGTGCACAATACCCATTCCCAGGAGCAGACACAGACTCAGTCTCAGCGCCACAATGGCAAAGCTACTGCTTACTGA >Glyma14g40580.2 sequence type=CDS gene model=Glyma14g40580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGTGTTGATCAGAGTAATATGAATCGAAATAGTTGTGTATTTGGTTCATCTTCATCTTCATCATCAGGGGGTGCTCTTAGACCCCCAAATCGATTGAATAGTAATGTTATGCTTATTAATCAAATGGGTGTTACTGAGAACCAGAAACCCTATGGTATACCACCCTCACACCCTAATACCAATATTTCACCTTCATCAGCTTATCCTCAGTTTTTTGCCTCCCAATCCCAATCCAATTCGGTTTCCCAGCGTTTGAGTTCTCCCAATTTGAGTCCTGCTTCGTCCCATTCCAGGTCTTTGTCTCAGCCCTCTTTTTTCTCTCTGGATTCCTTGCCCCCATTGAGTCCTTCCCCTTATAAAGAACCTTCCTTTTCTGACTCAATTTCGACTGATGTGTCTGCTGAGGAAAGCTTGGCTAACTCTCATGCCCCCTTGCCGAATCGTGGCCACGCTCTTCAGCTTGGCCATTCTCTTCCTCCTCGTAAAGGACATAGGCGCTCTAGCAGTGATTCCCCTTTAGGAATTGCTGATTTTATTCAGTCTGTCCCTCAGTCTGTTTCCTCTAAGACTTGGAGCGACCGTGAAAATTTGGCTTCTAGGGGAGGGAACTCTGGTTTTGAGAAGCCGATTCAGTTAGTGTTAAAGGAACCAATGAAGGATATGGACTGCGTTGATGGCTTTGGTGGAGAACCTATGGTTGGGAGGAAAGAGGATGATGCACTGGATGATTTGTTTAGTGCATATATGAATTTGGACAATATTGATGGCCTGAATTTTTCTGGTATGGAAGACAAGGATTTGGATAGCAGAACTAGTGGTTCAAAAACAGTTGAGAGCAGTGATAATGAAGTTGAGAGTCATGCATATGGCAAAGTGATTGGTGCTCAAGGGGCTATTTCACGCTGTTCTGAAGAGAGGAGGGAAGGAGTGAAGAGGAGTTCTAATGGAGACGTTGCACCTGGTTCCCGACACCGGAGAAGTTTCTCATTGGACAGCTCCATAGGAAATTTTCATATTGGAGATGAATTGCCTAAGCTTCCTCCTTCGCAGAACCGATTTGGTCAACACTCGCCTAGCAGTTCAATAGATGGTAAGACATCTGAAACAAGCATGGAGTTTGGAAATGGTGAATTCAGCTCAGAGGAGCTAAAGAAAATAAAGGAGAACGATAAACTTGCTGAAATTGCCATGGCTGATCCTAAGCGTGCAAAAAGGATTTTGGCTAATCGTCTATCAGCTGCTCGCTCAAAAGAGAGGAAGATGCGGTACATTTCTGAATTAGAGCTCAAAGTTCAAACACTTCAGACTGAGACAACCACATTGTCTACTCAGTTTACCAAATTACAGATGAATAATTCAGAGCTTAAAAGTGAGAATAATGAGTACAAATTAAGGATTCAAGCCTTGGAACAGCAGTCCCAACTGAAAGATGGTATGGATATGCATTTTTCATCTACTTTGTGTATTAGCTCAAATCTGCTTTAG
>Glyma14g40580.1 sequence type=predicted peptide gene model=Glyma14g40580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGVDQSNMNRNSCVFGSSSSSSSGGALRPPNRLNSNVMLINQMGVTENQKPYGIPPSHPNTNISPSSAYPQFFASQSQSNSVSQRLSSPNLSPASSHSRSLSQPSFFSLDSLPPLSPSPYKEPSFSDSISTDVSAEESLANSHAPLPNRGHALQLGHSLPPRKGHRRSSSDSPLGIADFIQSVPQSVSSKTWSDRENLASRGGNSGFEKPIQLVLKEPMKDMDCVDGFGGEPMVGRKEDDALDDLFSAYMNLDNIDGLNFSGMEDKDLDSRTSGSKTVESSDNEVESHAYGKVIGAQGAISRCSEERREGVKRSSNGDVAPGSRHRRSFSLDSSIGNFHIGDELPKLPPSQNRFGQHSPSSSIDGKTSETSMEFGNGEFSSEELKKIKENDKLAEIAMADPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMNNSELKSENNEYKLRIQALEQQSQLKDALNETLDAEVRRLRCTVAELGGESLLSSRMAQQLAISQQVFQLKEQQHPNQLRHVQVHNTHSQEQTQTQSQRHNGKATAY* >Glyma14g40580.2 sequence type=predicted peptide gene model=Glyma14g40580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGVDQSNMNRNSCVFGSSSSSSSGGALRPPNRLNSNVMLINQMGVTENQKPYGIPPSHPNTNISPSSAYPQFFASQSQSNSVSQRLSSPNLSPASSHSRSLSQPSFFSLDSLPPLSPSPYKEPSFSDSISTDVSAEESLANSHAPLPNRGHALQLGHSLPPRKGHRRSSSDSPLGIADFIQSVPQSVSSKTWSDRENLASRGGNSGFEKPIQLVLKEPMKDMDCVDGFGGEPMVGRKEDDALDDLFSAYMNLDNIDGLNFSGMEDKDLDSRTSGSKTVESSDNEVESHAYGKVIGAQGAISRCSEERREGVKRSSNGDVAPGSRHRRSFSLDSSIGNFHIGDELPKLPPSQNRFGQHSPSSSIDGKTSETSMEFGNGEFSSEELKKIKENDKLAEIAMADPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMNNSELKSENNEYKLRIQALEQQSQLKDGMDMHFSSTLCISSNLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
