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Report for Sequence Feature Glyma14g40540

Feature Type:gene_model
Chromosome:Gm14
Start:49519377
stop:49526524
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g40540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19850AT Annotation by Michelle Graham. TAIR10: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr1:6887353-6891182 FORWARD LENGTH=902 SoyBaseE_val: 0ISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009725GO-bp Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009886GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009942GO-bp Annotation by Michelle Graham. GO Biological Process: longitudinal axis specification SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010305GO-bp Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048439GO-bp Annotation by Michelle Graham. GO Biological Process: flower morphogenesis SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0048507GO-bp Annotation by Michelle Graham. GO Biological Process: meristem development SoyBaseN/AISS
GO:0048519GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process SoyBaseN/AISS
GO:0048527GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root development SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
GO:0044212GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region DNA binding SoyBaseN/AISS
PF02309PFAM AUX/IAA family JGI ISS
PF02362PFAM B3 DNA binding domain JGI ISS
PF06507PFAM Auxin response factor JGI ISS
UniRef100_Q8GT89UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hypothetical transcription factor n=1 Tax=Prunus persica RepID=Q8GT89_PRUPE SoyBaseE_val: 0ISS
UniRef100_UPI000233B284UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B284 related cluster n=1 Tax=unknown RepID=UPI000233B284 SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g40540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g40540
ParalogEvidenceComments
Glyma17g37580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g40540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g217700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g40540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g40540
>Glyma14g40540.1   sequence type=CDS   gene model=Glyma14g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCTTCCGTGGAAGAAAAGATTAAAACTGGAGGAGGAATGATTGTTGGTGGTCAAACTCTTGCTGCTGAGATGAAACTGTTGAAAGAAATGCAGGAACATTCTGGGGTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTGTCATTACCCCAGGTTGGGAGCCTTGTGTTTTACTTCCCTCAGGGACATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACATCACAGATTCCAAACTACCCCAATCTTCCATATCAGTTGCTGTGTCAAGTTCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTTTGCAACCACTGAATTCTGAAAGAGAAGTCTTTCCCATATCCGACTTTGGGCACAAGCACAGTAAACATCCCAGTGAGTTCTTCTGCAAAACTTTGACTGCTAGTGACACGAGCACGCACGGTGGCTTTTCGGTTCCACGCAGAGCTGCAGAGAAACTCTTTCCTCCATTGGACTACACAATTCAACCCCCGACTCAAGAGCTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATATACAGAGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAGATCACAATTGCGAGTTGGCGTTAGGCGTGTCAATCGTCAGCAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCAAATCGAAGTCCATTCACTATTTTCTACAATCCAAGAGCATGCCCCTCAGAATTTGTTATTCCTCTGGCCAAATACAGAAAATCTGTATTTGGGACTCAGGTCTCAGTTGGCATGAGATTTGGCATGATGTTTGAGACAGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTAAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAACAGAGTTAGTGTGTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAGGTCTAAAACGGCCATTACCATCTGGTCTTTTGGAAAATGAGTGGGGAACTTTGTTAAGAAGACCCTTTATAAGAGTTCCAGAAAATGGAACCATGGAGCTCTCAAACTCAATTCCAAATCTCTACTCAGAACACATGATGAGAATGCTTTTGAAACCCCAGCTGATTAACAATAATGGAGCTTTTTTATCTGCCATGCAACAAGAATCTGCTGCTACAAGAGGCCCCTTGCAAGAGATGAAGACCACACTTGCAGCAGAAAACCAAATGCCACTTAAAAATCTACATCCTCATTCTATCCCTGACCAACCTAATGCCTTAAACATGCAATCACTGTTGAAAAACGACCAACCTGAAAAATTGCACCCTCTTGGCAAAATTGATAATCATCTGTCTTCTGGGATAGTTATTGACAAGCCAAAATCAGAATCTGAGGTATTACCTGATCATGTGATTGACTACCCTTCCATGGAAGGGTGCAACATCGAAAAGGTGGCAGCAAATCCTGTTAACCAGCAAGGTCTAGCAAACCAATTGCCATTCCATAATCAAAACCAGAGTCCACTACTCCCTCAATCTAGTCCATGGCCTATGCCACCTCAGATAGAATTGTCCATGCCCCATCCTCAAATGATTGATATGGTTCAAGCTGATTCTGCTATGGTAAATGGCCTGTTTCCTCAGCTTGACATCAATGAATGGATGTCATATGCTTCTTCCCAACCTTTTGCTGGGCAGAACAGACCAACTGGACCTTTGTCTGACTTGCAAGAACATACCTCACTTCAGCCTCAAGTAGTGAATCCCCCTTTACCTTCAATGAACAATGAAGTGTGGGATCATTATGTCAAGAACTTGAAGTTCTTATCTCAAGCAGACCAGCTAACATCCATTTGTCAGCCGGGGCTGTATGGCCTCAATGGCATACCAAGCTCAAACAATTTGAGGGATCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAATGTTGATGCTAGCAACAGCGTAGGCACCACTGTGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACAATGAAGGACAGAGAATTTCAAAATCCTCAAGATTGCATGGTGGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACTTCAGCAAGTCTAACTGAATCACATGCCTTTCCTCTTAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTCCTGCAGAATAACTCGTGGCAGCAAGTACCTGCGCCCATCCGAACTTACACAAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTACGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTCGATGGTCTGCTGAATGACACTAAATGTTCAGGATGGAAATTGGTCTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGTGATGATCCTTGGGAAGAATTTGTGGGCTGTGTCCGCTGCATAAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAACAGTGGGGCTTTGCAAGGGATGAATGTTTGA
Predicted protein sequences of Glyma14g40540
>Glyma14g40540.1   sequence type=predicted peptide   gene model=Glyma14g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMASVEEKIKTGGGMIVGGQTLAAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPYQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEREVFPISDFGHKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDERSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSGLKRPLPSGLLENEWGTLLRRPFIRVPENGTMELSNSIPNLYSEHMMRMLLKPQLINNNGAFLSAMQQESAATRGPLQEMKTTLAAENQMPLKNLHPHSIPDQPNALNMQSLLKNDQPEKLHPLGKIDNHLSSGIVIDKPKSESEVLPDHVIDYPSMEGCNIEKVAANPVNQQGLANQLPFHNQNQSPLLPQSSPWPMPPQIELSMPHPQMIDMVQADSAMVNGLFPQLDINEWMSYASSQPFAGQNRPTGPLSDLQEHTSLQPQVVNPPLPSMNNEVWDHYVKNLKFLSQADQLTSICQPGLYGLNGIPSSNNLRDLSAESNNQSEICVNVDASNSVGTTVVDPSTSSTILDEFCTMKDREFQNPQDCMVGNLSSSQDVQSQITSASLTESHAFPLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKCSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV*






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