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Report for Sequence Feature Glyma14g40450

Feature Type:gene_model
Chromosome:Gm14
Start:49380034
stop:49383640
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g40450
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75710AT Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein | chr1:28428806-28431128 FORWARD LENGTH=462 SoyBaseE_val: 3.00E-176ISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
UniRef100_B9R880UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9R880_RICCO SoyBaseE_val: 0ISS
UniRef100_I1MC45UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MC45_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g40450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g40450
ParalogEvidenceComments
Glyma17g37710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g40450 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g218700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g40450
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g40450
>Glyma14g40450.1   sequence type=CDS   gene model=Glyma14g40450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCCTAACTTCCTTGCCTGAACAGTTCTCCAGTACCCCCAAACGCCACAAACGTAAGCCACAACAACAACAACAGAAACAAAAGCAAAAGCAAAAGCAAAAACAGAAACAGAAACCAGCCTCTTCATGGGACCAAATCAAGAACCTCTTAACCTGCAAACAGATGGAAGAGTCGAGAGTGCACGACCCTTCGAAAATAACTGGGTACTCGAAGCTAGGGTCTTCTTGCAGCTCCATATGCAGCTTCAGAGATGTGGTTCATGGGAACACACGTGTTGTGCATAGGTCTGATAACTCCTCACCAGAGAGTAGTTCTCTGGGTCAGGAAACTAATGGGTTACTCACTAGGAAACCTGTTACTACTACTACTACTCGTTCCGCAAAATCAAACGGCGGAGCAACCTGCACGTCATCATCATCATCTTCCAGAGGCATGCAATTCAGGAAGCTTTCTGGGTGTTATGAATGTCACATGATCATTGACCCTAGCAGGTTACCAATTGCGAGGAGCACTGTGTGTGCTTGCTCTCACTGTGGTGAGGTCTTCCCTAAAATGGAAAGTTTGGAGCTTCATCAAGCTGTTCGTCATGCCGTTTCGGAGCTAGGTCCGGAGGATTCGGGTCGGAACATAGTGGAAATAATCTTCAAATCGAGCTGGTTGAAGAAGGACAACCCGATTTGCAAGATCGAACGGATACTAAAAGTGCACAACACCCAACGCACCATCCAACGGTTTGAGGAGTGCAGGGACACCGTAAAGAACCGTGCGCTGGGCAGCACCAAGAAAAACCCCAGGTGCGCAGCCGACGGCAACGAACTCTTGCGGTTCCACTGCACCACCTTAACGTGCGCACTGGGTGCACGTGGCTCTTCCTCCCTCTGCGCCTCCGTACCCGGCTGCAGCGTCTGCACCATCATCAGGCACGGTTTCCAAGGCGGGTGCGGCGGCGGTGGAGACCACGCGAGGGCGAAGGGCGTGAGAACCACCGCCAGCAGCGGTCGGGCCCACGACTCTGTGGTGTGCGGTGACGCCACGCGCAGGGCCATGCTGGTGTGTCGCGTGATCGCGGGCAGAGTGAAGCGCGTGGTGGAGGACGCGCCGTCGGAGGAGGAACACGTGTCGTATGATTCCGTTGCGGGGTACGCTGGAATCTACTCGAATCTCGAGGAGCTTGTTGTTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTGGTCATTTACAAAGTTCCTTTGTGTTAG
Predicted protein sequences of Glyma14g40450
>Glyma14g40450.1   sequence type=predicted peptide   gene model=Glyma14g40450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLTSLPEQFSSTPKRHKRKPQQQQQKQKQKQKQKQKQKPASSWDQIKNLLTCKQMEESRVHDPSKITGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSSLGQETNGLLTRKPVTTTTTRSAKSNGGATCTSSSSSSRGMQFRKLSGCYECHMIIDPSRLPIARSTVCACSHCGEVFPKMESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEECRDTVKNRALGSTKKNPRCAADGNELLRFHCTTLTCALGARGSSSLCASVPGCSVCTIIRHGFQGGCGGGGDHARAKGVRTTASSGRAHDSVVCGDATRRAMLVCRVIAGRVKRVVEDAPSEEEHVSYDSVAGYAGIYSNLEELVVFNPKAILPCFVVIYKVPLC*






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