Glyma14g40290 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g40290

Feature Type:	gene_model
Chromosome:	Gm14
Start:	49258146
stop:	49264919
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g40290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20080	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr1:6962236-6964912 FORWARD LENGTH=537	SoyBase	E_val: 0	ISS
GO:0009306	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein secretion	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR10774	Panther	CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED)	JGI		ISS
PTHR10774:SF2	Panther	CALCIUM LIPID BINDING PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_G7I7R4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Synaptotagmin-7 n=1 Tax=Medicago truncatula RepID=G7I7R4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MC28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MC28_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g40290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g40290

Paralog	Evidence	Comments
Glyma17g37850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g40290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g220000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g40290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g40290

Limit To All Plant Sequences

>Glyma14g40290.1   sequence type=CDS   gene model=Glyma14g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATTTTGAGCACTATAGCAAGCTTTTTTGGATTTGGAATGGGAACTTCAATTGGGCTAGTCATTGGATACTATTTGTTCATATACTTCCAGTCAACAGATGTTAAGGATCCAGTAATTCAACCTTTGATTGAGCAAGATGCTAAAACATTACAACTGTTGCTTCCAGAGATACCCACTTGGATTAAAAACCCAGACTATGATCGTCTTGACTGGCTTAATAAATTTATCGAGTATATGTGGCCTTATCTGGACAAGGCAATTTGCAAGACTGCAAAGAGTATAGCAAAGCCCATTATTGCTGAGCAAATTCCGAAGTACAAAATAGATTCAGTTGAATTTGAAGAACTTAACTTGGGTTCTCTGCCACCAACTTTTCAAGGAATGAAAGTCTATGTGACTGACGAAAAGGAGTTGATTATGGAACCATCAGTGAAGTGGGCTGGGAATCCTAACATTATAGTTGCAGTTAAAGCATTTGGGCTTCGAGCCACAGTCCAGGTTGTTGATTTGCAAGTATTTGCTGCTCCACGTATAACTCTGAAGCCTTTGGTTCCAAGTTTTCCATGCTTTGCCAATATTTACGTGTCTCTCATGGAGAAGCCACATGTTGATTTTGGACTAAAACTGCTTGGAGCTGATGCAATGTCTATTCCTGGTCTTTATAGGATTGTCCAGGAAATCATTAAAGACCAAGTTGCAAAAATGTATCTGTGGCCCAAGGCCTTAGAGGTTCAAATAATGGATCCAACAAAAGCCATGAAAGTGCCAGTTGGAATCCTTCATGTGAAAGTTGTAAGGGCAGAGAAGCTTAAAAAGAAAGATCTACTGGGGGCATCAGACCCTTATGTGAAACTCAAACTCACAGAAGAGAAACTTCCTTCAAAGAAAACAACTGTGAAATACAAGAATTTGAATCCAGAATGGAATGAGGAATTTAATATAGTCGTCAAAGATCCAGAATCTCAAGTCTTAGAGCTTACTGTTTATGACTGGGAGCAGATTGGCAAGCATGACAAGATGGGTATGAATGTCATTCCATTGAAAGAGATTACACCTGATGAACCAAAAGCGGTGACTCTTAATTTACTCAAGACCATGGACCCTAATGATCCTGAGAATGCGAAGTCACGTGGGCAGCTAACTGTTGAAGTTCTGTACAAACCTTTTAAGGAGGATGAGTTACCTCAGAGTGCAGAGGATTCCAATGCAATAGAAAAGGCTCCTGAAGGAACACCTGCTAGTGGTGGTCTGCTTGTAATTATTGTTCATGAAGCTGAAGATGTGGAAGGAAAACACCACACAAATCCATATGTGCGACTGCTATTTAAGGGAGAGGAGAGAAAAACCAAGCATGTCAAGAAAAATAGAGATCCAAGATGGGGTGAGTCGTTTCAATTTATGCTTGAGGAACCCCCCACCAATGAGAGACTATATGTTGAAGTGCAAAGTGCTTCCTCAAAGCTAGGCCTGCTCCATCCTAAGGAAAGTCTGGGTTATGTGGATATAAAATTGTCTGATGTTGTTACCAACAAAAGAATCAACGAGAAATATCATCTCATTGACTCAAGAAATGGACGAATTCAAATCGAGCTTCAGTGGAGAACTCCTTGA

Predicted protein sequences of Glyma14g40290

Limit To All Plant Sequences

>Glyma14g40290.1   sequence type=predicted peptide   gene model=Glyma14g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGILSTIASFFGFGMGTSIGLVIGYYLFIYFQSTDVKDPVIQPLIEQDAKTLQLLLPEIPTWIKNPDYDRLDWLNKFIEYMWPYLDKAICKTAKSIAKPIIAEQIPKYKIDSVEFEELNLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNIIVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMSIPGLYRIVQEIIKDQVAKMYLWPKALEVQIMDPTKAMKVPVGILHVKVVRAEKLKKKDLLGASDPYVKLKLTEEKLPSKKTTVKYKNLNPEWNEEFNIVVKDPESQVLELTVYDWEQIGKHDKMGMNVIPLKEITPDEPKAVTLNLLKTMDPNDPENAKSRGQLTVEVLYKPFKEDELPQSAEDSNAIEKAPEGTPASGGLLVIIVHEAEDVEGKHHTNPYVRLLFKGEERKTKHVKKNRDPRWGESFQFMLEEPPTNERLYVEVQSASSKLGLLHPKESLGYVDIKLSDVVTNKRINEKYHLIDSRNGRIQIELQWRTP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain