SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35890 | AT | Annotation by Michelle Graham. TAIR10: winged-helix DNA-binding transcription factor family protein | chr4:16997433-17000410 FORWARD LENGTH=523 | SoyBase | E_val: 2.00E-41 | ISS |
| GO:0010150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf senescence | SoyBase | N/A | ISS |
| GO:0048523 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG2590 | KOG | RNA-binding protein LARP/SRO9 and related La domain proteins | JGI | ISS | |
| PTHR22792 | Panther | LUPUS LA RIBONUCLEOPROTEIN | JGI | ISS | |
| PTHR22792:SF23 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF05383 | PFAM | La domain | JGI | ISS | |
| UniRef100_E6NTY6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JHL20J20.1 protein n=1 Tax=Jatropha curcas RepID=E6NTY6_9ROSI | SoyBase | E_val: 1.00E-105 | ISS |
| UniRef100_UPI000233B27C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B27C related cluster n=1 Tax=unknown RepID=UPI000233B27C | SoyBase | E_val: 0 | ISS |
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Glyma14g40180 not represented in the dataset |
Glyma14g40180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g37950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g221100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g40180.1 sequence type=CDS gene model=Glyma14g40180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCACTGCTGCTAAATCTTCAAACCACCACTCGCCCCCCAGTGCTCCGTCACCGGCGCAGCCCGGAGACGGCAACAGCCCCAAGTTCCCGCGAAAAAATCTTCCCTCGCCGTGGGCTCAGGTAGTTCGCGGCGGCGAGCCGGAATCGGCGGGCGGCATTCACCAATCACCGCCGTCATCGTCCTCGTCGTCGTCCTCGTCTCTGGTTGCTGATCAAGCCCCGTCATCGGAGGTGATTCCGGTGTCGTCGCCGGTGGATAATTCTAATACGGTTGGTGATGTAGATAGTTCCGATGGCGCTGAAGGCAATGCGGATTGTTCTAAAAAGCCCGTTTGGAACAAGCCCTCAAACGGCGTCGTCGTCGTCGAGACTGGGCCTGTAATGGGCGCTGCTGAATCATGGCCCACTTTGCTTGCGTCCACCAAAGGTTCTGCTAAATTGCCTGCTGAATCGTCCTCCAAGACTGTTACCGATGATGGATCACTCTCCACTTCTCAGTGGCCAATGACTTCACAATCTCCTCAGAAACAAGCGACTACTATTGCAAAACCTAGTTCTGCACCAAATTATAATGTGCCTAGTAGACAAAGATCGATGAAGCGGGTAGGTGGCAGCAGCACTGGATCTGGTCCTTCACAGAGCAACTTCTCCAACCCTCCCCCAACGCCGCCCCCGCCCCCGCCTTTTCCTGTATACCAGCTCCCACCAGTTAGCTATGGTAATATGGTACCAGGTGTCCCTGACCATGCTCCAAGAGATCATTACCGGAACAATAACTGGGATGCAAGACCATTGGTTGGGGGTTTTGTGCCTGCAATGAATGAATATCGGGGTTCCTCTCGTAGGGGTTATTTTGGGCCTCATCCACGAGGAGATGGTTCCTATCATAATAGTTATGGTAGCAGGCGTGATCATCAAGATCGTGGAAATTATGTGAATGCTAGAGATGCTTTTCTACCTCAACCAAGGATGCCTCCAAGAGGATTACTGAGGCACCCACCACCTAATACCGCTGCATTTGTGGGCCCTCAGCCTATTGGACCATTTGCTAACCCCATCAGTTTTCCTGAGTTCTATTACTATCAACCAGTAACAGTGGAACAGTTTACGGGTATGCCATTCTTCACTCACAGCCCTCCTCCTACACCGTTCTTCTCTGCCGCAGAATCTCCTCTCTCTAATATGATAGTCTACCAAATTGAATATTACTTTAGTGATGCTAATTTAGTGAAAGACGCATTTTTAAGGTCTAAAATGGACGAACAGGGTTGGGTTCCTGTTACTTTGATAGCAGACTTTCCTCGAGTTAAAAATTTGACAACCAACATTCAGTTGATACTTGACTCTCTCAGAACTTCTACTGTTGTGGAAGTGCAAGGTGACAAGTTAAGGAGACTTAACGAGTGGATGAGATGGCTGCCCTCTGCTCAGCGACGATCTAATTCTGGTTCAATATCTCCTAGTGGGTCAACACACAATAATCTTACAGCTAATTTTCAAACTATCATCTTGGAAGAAACCACTGCAGATGAAAGTCCAACACAGCCAAACGGTGGTGATGCTACTAAGAGCAGCATTTAA
>Glyma14g40180.1 sequence type=predicted peptide gene model=Glyma14g40180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVTAAKSSNHHSPPSAPSPAQPGDGNSPKFPRKNLPSPWAQVVRGGEPESAGGIHQSPPSSSSSSSSSLVADQAPSSEVIPVSSPVDNSNTVGDVDSSDGAEGNADCSKKPVWNKPSNGVVVVETGPVMGAAESWPTLLASTKGSAKLPAESSSKTVTDDGSLSTSQWPMTSQSPQKQATTIAKPSSAPNYNVPSRQRSMKRVGGSSTGSGPSQSNFSNPPPTPPPPPPFPVYQLPPVSYGNMVPGVPDHAPRDHYRNNNWDARPLVGGFVPAMNEYRGSSRRGYFGPHPRGDGSYHNSYGSRRDHQDRGNYVNARDAFLPQPRMPPRGLLRHPPPNTAAFVGPQPIGPFANPISFPEFYYYQPVTVEQFTGMPFFTHSPPPTPFFSAAESPLSNMIVYQIEYYFSDANLVKDAFLRSKMDEQGWVPVTLIADFPRVKNLTTNIQLILDSLRTSTVVEVQGDKLRRLNEWMRWLPSAQRRSNSGSISPSGSTHNNLTANFQTIILEETTADESPTQPNGGDATKSSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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