SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G76010 | AT | Annotation by Michelle Graham. TAIR10: Alba DNA/RNA-binding protein | chr1:28528505-28530488 REVERSE LENGTH=350 | SoyBase | E_val: 4.00E-85 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG2567 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13516 | Panther | RIBONUCLEASE P 25KDA SUBUNIT-RELATED | JGI | ISS | |
| PF01918 | PFAM | Alba | JGI | ISS | |
| UniRef100_C6TE19 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TE19_SOYBN | SoyBase | E_val: 2.00E-176 | ISS |
| UniRef100_G7JAD8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease P protein subunit p25 n=1 Tax=Medicago truncatula RepID=G7JAD8_MEDTR | SoyBase | E_val: 3.00E-84 | ISS |
|
Glyma14g40120 not represented in the dataset |
Glyma14g40120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g38010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g221700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g40120.2 sequence type=transcript gene model=Glyma14g40120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGCCATTGGGGAATGGGCCGAGCAGAGAGAGGCCTATTAAGAGTGGGAAAAGGAGTTGGTTAGGGTAGTTTGGAGAGAGAGGGTGTCGGGTGTTAGGGAGTATATAAAGTGAAACACTTAGTAGCAACCAGGTTAGGGCGCAATAGAAAATACAAGCCGTAGAAGAGGGCTCGCTCTTTCGTGTTTTTGTTCGCGAAGGAAACTCTATCCTTAGCTATCGCGATGGATCGGTACCAGAAGGTGGAGAAGCCAAGAGCTGAAACTCCAATCGATGAAAACGAGATCCGGATTACTAGTCAGGGAAGGATGCGCAACTACATTACTTACGCCATGAGCTTGCTTCAGGAGAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGGGGAGAGCTATCAACAAAACCGTGACAATTGTGGAGTTGATCAAGAGGAGAATTGTGGGCCTCCACCAGAATACAGCAATTGGATCCACTGATATCACTGATACTTGGGAGCCCCTAGAGGAAGGCCTCCTTCCTTTGGAGACGACAAGGCACGTGTCAATGATAACAATAACCCTTTCAAAGAAGGAACTCGATACATCGTCTGTGGGGTATCAGCCTCCACTACCAGCTGACCAGGTGAAGGCTGCTACAGATTTTGATTATGAAGGAGAGGGTTCACCTAATGGTCGTGTTCGTGGTCGTGGTGGCCGAGGCAGGGGAAGGGGCAGAGGTAATGGCTTTATTTCAGCTGATTATGAGGATGGAGGTTGGGATCGCAATAGGGGAAATGCTAGGGGCAGGGGTAGAGGAAGAGGACGTGGCTTTCGTGGTCGTGGAAGGGGAGGGTACAATGGGCCCCATGTTGACATGCAAGATGGAGGATACAACCAAGATGTACCTCAAGGCCGTGGTACTTGATCCTTATTACTTTTGTTCATTTCTGTGGTAGATACATGTGTGCAAGGCTATCAGTG
>Glyma14g40120.1 sequence type=CDS gene model=Glyma14g40120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCGGTACCAGAAGGTGGAGAAGCCAAGAGCTGAAACTCCAATCGATGAAAACGAGATCCGGATTACTAGTCAGGGAAGGATGCGCAACTACATTACTTACGCCATGAGCTTGCTTCAGGAGAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGGGGAGAGCTATCAACAAAACCGTGACAATTGTGGAGTTGATCAAGAGGAGAATTGTGGGCCTCCACCAGAATACAGCAATTGGATCCACTGATATCACTGATACTTGGGAGCCCCTAGAGGAAGGCCTCCTTCCTTTGGAGACGACAAGGCACGTGTCAATGATAACAATAACCCTTTCAAAGAAGGAACTCGATACATCGTCTGTGGGGTATCAGCCTCCACTACCAGCTGACCAGGTGAAGGCTGCTACAGATTTTGATTATGAAGGAGAGGGTTCACCTAATGGTCGTGTTCGTGGTCGTGGTGGCCGAGGCAGGGGAAGGGGCAGAGGTAATGGCTTTATTTCAGCTGATTATGAGGATGGAGGTTGGGATCGCAATAGGGGAAATGCTAGGGGCAGGGGTAGAGGAAGAGGACGTGGCTTTCGTGGTCGTGGAAGGGGAGGGTACAATGGGCCCCATGTTGACATGCAAGATGGAGGATACAACCAAGATGTACCTCAAGGCCGTGGTCGTGGCCGTGGCAGGGGGGGATATCGTGGAAGGGGTCGTGGCTTCCGATCGAATGGGCCAATCCAAGCAGCTGCCTGA >Glyma14g40120.2 sequence type=CDS gene model=Glyma14g40120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCGGTACCAGAAGGTGGAGAAGCCAAGAGCTGAAACTCCAATCGATGAAAACGAGATCCGGATTACTAGTCAGGGAAGGATGCGCAACTACATTACTTACGCCATGAGCTTGCTTCAGGAGAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGGGGAGAGCTATCAACAAAACCGTGACAATTGTGGAGTTGATCAAGAGGAGAATTGTGGGCCTCCACCAGAATACAGCAATTGGATCCACTGATATCACTGATACTTGGGAGCCCCTAGAGGAAGGCCTCCTTCCTTTGGAGACGACAAGGCACGTGTCAATGATAACAATAACCCTTTCAAAGAAGGAACTCGATACATCGTCTGTGGGGTATCAGCCTCCACTACCAGCTGACCAGGTGAAGGCTGCTACAGATTTTGATTATGAAGGAGAGGGTTCACCTAATGGTCGTGTTCGTGGTCGTGGTGGCCGAGGCAGGGGAAGGGGCAGAGGTAATGGCTTTATTTCAGCTGATTATGAGGATGGAGGTTGGGATCGCAATAGGGGAAATGCTAGGGGCAGGGGTAGAGGAAGAGGACGTGGCTTTCGTGGTCGTGGAAGGGGAGGGTACAATGGGCCCCATGTTGACATGCAAGATGGAGGATACAACCAAGATGTACCTCAAGGCCGTGGTACTTGA
>Glyma14g40120.1 sequence type=predicted peptide gene model=Glyma14g40120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRYQKVEKPRAETPIDENEIRITSQGRMRNYITYAMSLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSVGYQPPLPADQVKAATDFDYEGEGSPNGRVRGRGGRGRGRGRGNGFISADYEDGGWDRNRGNARGRGRGRGRGFRGRGRGGYNGPHVDMQDGGYNQDVPQGRGRGRGRGGYRGRGRGFRSNGPIQAAA* >Glyma14g40120.2 sequence type=predicted peptide gene model=Glyma14g40120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRYQKVEKPRAETPIDENEIRITSQGRMRNYITYAMSLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSVGYQPPLPADQVKAATDFDYEGEGSPNGRVRGRGGRGRGRGRGNGFISADYEDGGWDRNRGNARGRGRGRGRGFRGRGRGGYNGPHVDMQDGGYNQDVPQGRGT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
