Glyma14g40090 - SoyBase

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Report for Sequence Feature Glyma14g40090

Feature Type:	gene_model
Chromosome:	Gm14
Start:	49077673
stop:	49084570
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g40090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76040	AT	Annotation by Michelle Graham. TAIR10: calcium-dependent protein kinase 29 \| chr1:28537743-28540448 FORWARD LENGTH=561	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004683	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0032	KOG	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily	JGI		ISS
PTHR24347	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24347:SF13	Panther	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE I	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7I8E2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase n=1 Tax=Medicago truncatula RepID=G7I8E2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B9BB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B9BB related cluster n=1 Tax=unknown RepID=UPI000233B9BB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g40090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g40090 not represented in the dataset	Glyma14g40090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g40090

Paralog	Evidence	Comments
Glyma17g38040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g40090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g222000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g40090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g40090

Limit To All Plant Sequences

>Glyma14g40090.2   sequence type=transcript   gene model=Glyma14g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTTCCACTGCTTCAACTCGATCTGAGGCTGAAACTATCATATATATAAATAACCAATTAACTAATATCTCTCCACAAAGAAACATTATTCGACATGGGGCACTGCTTCAGCAAACCCAGCACAAACGAAATACCAATCAACTATGATTATTCACCACCCCCTCATCATTATCAGCCACGCCCGCACTCACACTCAGACTCAAGGAGAACACAACAACCTCAACTTCAACCTCAACCTGGTTACCCCAATCGAACTCCAAAATCAGACCCATCTCCATCATCATCATCATTTGGTGATCAAGTAGCAGCACGAATATTAGACAAACCATACTTTGACATCAAATCTCTTTACAACCTCGAGAGGGAACTCGGGAGGGGTCAATTCGGGATCACTCGTCTTTGCACCGAGAAGACCACGGGAAGGAAATACGCTTGCAAGTCCATTCCAAAGCGGAAGCTAAGTAAAAAAAAGCATACTGATGATGTCAAGAGGGAAGTTCTCATCCTTCAGCACCTCTCGGGACAGCCCAACATCGTTGAGTTCAAGGGTGCTTATGAGGATTGGCAACACGTGCATTTGGTGATGGAGTTGTGTTTGGGTGGTGAGCTCTTCGACCGCATCACTGCAAAGGGTAGTTACTCCGAGAGTGAAGCTGCTTCTATATTCAGACAAATTGTTAATGTGGTTCATGCTTGTCATTTTATGGGGGTCATGCATAGGGACCTTAAGCCTGAAAATTTCTTGCTTGCTAATAAGGATCCTAAGGCACCTCTCAAAGCCACCGATTTTGGATTGTCCGTCTTCATTGAAGAAGGTATAGTGTATAGAGAAATTGTTGGAAGTGCATACTATGTAGCTCCGGAGGTGTTAAAGCGAAATTATGGAAAGGAGATAGATGTGTGGAGCGCAGGAATCATTTTATACATCCTTCTAAGTGGGGTGCCTCCATTTTGGGGCGAAAACGAGAGAAGCATATTTGAAGCTATTTTGGGAGGCAAGCTTGATCTGGAGAGCGCACCATGGCCTTCAATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGTTGAATAATGACCCTAAGAAACGCATTACAGCTGCCGAAGCCCTTGAACACCCGTGGATGAAGGAAGGTGGTGAAGCATCTGACAAGCCTTTAGACAATGCTGTTTTGACTAGAATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTTATAGCAGAAAACCTTTCAGAGGAAGAAATAAAGGGTTTGAAACAAATGTTCAACAATATGGATACTGATCGCAGTGGCACAATCACATTCGAGGAACTCAAATCTGGATTGACCAAATTGGGATCCAAGCTTAGTGAATCAGAAATAAAGCAGCTAATGGACGCTGCTGATGTTGACAAAAGTGGTACTATTGACTATCAAGAATTCATCACTGCCACCATTAACCGGCATAAACTAGAGAAGGAAGAGAATTTGTTTAAGGCTTTTCAATACTTTGACAAGGATAGCAGTGGATATATAACAAGAGATGAGCTTAGACAAGCTTTGACTGAGTATCAAATGGGAGATGAAGCGACTATAGATGAAGTCATCGACGATGTTGACACTGATAACGACGGGAAAATTAATTACCAGGAGTTTGTGGCTATGATGAGAAAGGGGATCCTGGATATTGATGAGAAAGAGAAACCACAATAATTGTGTGATGTGACATGAAGACAAAAGTGGTTTCTGGATTTTTCTTGCTGATTTCTGCTGGGGATGAATTATCACTCTTGAATTTGTCAACTTGCATGTGTGTGCTTAATTCATGTAAAATTTTATGGCATTCAAAATGCCTAACTTTGTATAGCTGTTTTAAATAAACTGCGATATGTGAACAATAAATAAAACTATCATCATTCCAAGACATTCTTACGTTACAAATATGATTGCCGTTTGTCTCCTCACGGATAAGGTTATTTATTGATACCATTATCCTTAT

Coding sequences of Glyma14g40090

Limit To All Plant Sequences

>Glyma14g40090.1   sequence type=CDS   gene model=Glyma14g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACTGGGGATGTTTAAGGCATTGTTTTGCTGCAGCAAGCCCCATGAAATTGACATTGCAGACTCCTGGGACTCATCTCCTGATCATACCCCCAAACAACATTCTAAACCAAAGCCAAAGCCAAATGCTGCACCTACTCATTCCAATAATAAACAAACCACCACATCTACACAAATAGGAGCAATTCTAGGGAAACCATACGTGAACATACACCAAATGTACGAGATGAAGAAGGAACTGGGAAGCGGGCAGTCTGGTGTAACATATCTGTGTGTGGAGAAGACGACGAAGCGAGAGTATGCATGCAAATCCATCTCTCGGTCGAAGCTGCTGAGCACGCAGGAGATTGAGGATGTGAGAAGAGAGGTTATGATTCTGCAGCATCTTTCGGGGCAGCCCAACATAGTGGAGTTCAGAGGGGCTTATGAGGACAAGCAGAACGTGCATCTGGTGATGGAGCTGTGCAGTGGGGGCGAACTCTTCGACCGCATCATTGCCAAAGGGAACTACTCCGAGCGTGAAGCTGCCACTGTCATGAGGCAGATTGTCAATGTGGTTCACGTCTGCCATTTCATGGGCGTCATGCATCGAGACCTCAAGCCCGAGAATTTCTTGTTGGCCACCAACCACCCCGATGCAGCCGTAAAAGCCACTGATTTTGGACTCTCCATTTTTATTGAGGAAGGTATAGTGTATAGAGAAATTGTTGGAAGTGCATACTATGTAGCTCCGGAGGTGTTAAAGCGAAATTATGGAAAGGAGATAGATGTGTGGAGCGCAGGAATCATTTTATACATCCTTCTAAGTGGGGTGCCTCCATTTTGGGGCGAAAACGAGAGAAGCATATTTGAAGCTATTTTGGGAGGCAAGCTTGATCTGGAGAGCGCACCATGGCCTTCAATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGTTGAATAATGACCCTAAGAAACGCATTACAGCTGCCGAAGCCCTTGAACACCCGTGGATGAAGGAAGGTGGTGAAGCATCTGACAAGCCTTTAGACAATGCTGTTTTGACTAGAATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTTATAGCAGAAAACCTTTCAGAGGAAGAAATAAAGGGTTTGAAACAAATGTTCAACAATATGGATACTGATCGCAGTGGCACAATCACATTCGAGGAACTCAAATCTGGATTGACCAAATTGGGATCCAAGCTTAGTGAATCAGAAATAAAGCAGCTAATGGACGCTGCTGATGTTGACAAAAGTGGTACTATTGACTATCAAGAATTCATCACTGCCACCATTAACCGGCATAAACTAGAGAAGGAAGAGAATTTGTTTAAGGCTTTTCAATACTTTGACAAGGATAGCAGTGGATATATAACAAGAGATGAGCTTAGACAAGCTTTGACTGAGTATCAAATGGGAGATGAAGCGACTATAGATGAAGTCATCGACGATGTTGACACTGATAACGACGGGAAAATTAATTACCAGGAGTTTGTGGCTATGATGAGAAAGGGGATCCTGGATATTGATGAGAAAGAGAAACCACAATAA

>Glyma14g40090.2   sequence type=CDS   gene model=Glyma14g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCACTGCTTCAGCAAACCCAGCACAAACGAAATACCAATCAACTATGATTATTCACCACCCCCTCATCATTATCAGCCACGCCCGCACTCACACTCAGACTCAAGGAGAACACAACAACCTCAACTTCAACCTCAACCTGGTTACCCCAATCGAACTCCAAAATCAGACCCATCTCCATCATCATCATCATTTGGTGATCAAGTAGCAGCACGAATATTAGACAAACCATACTTTGACATCAAATCTCTTTACAACCTCGAGAGGGAACTCGGGAGGGGTCAATTCGGGATCACTCGTCTTTGCACCGAGAAGACCACGGGAAGGAAATACGCTTGCAAGTCCATTCCAAAGCGGAAGCTAAGTAAAAAAAAGCATACTGATGATGTCAAGAGGGAAGTTCTCATCCTTCAGCACCTCTCGGGACAGCCCAACATCGTTGAGTTCAAGGGTGCTTATGAGGATTGGCAACACGTGCATTTGGTGATGGAGTTGTGTTTGGGTGGTGAGCTCTTCGACCGCATCACTGCAAAGGGTAGTTACTCCGAGAGTGAAGCTGCTTCTATATTCAGACAAATTGTTAATGTGGTTCATGCTTGTCATTTTATGGGGGTCATGCATAGGGACCTTAAGCCTGAAAATTTCTTGCTTGCTAATAAGGATCCTAAGGCACCTCTCAAAGCCACCGATTTTGGATTGTCCGTCTTCATTGAAGAAGGTATAGTGTATAGAGAAATTGTTGGAAGTGCATACTATGTAGCTCCGGAGGTGTTAAAGCGAAATTATGGAAAGGAGATAGATGTGTGGAGCGCAGGAATCATTTTATACATCCTTCTAAGTGGGGTGCCTCCATTTTGGGGCGAAAACGAGAGAAGCATATTTGAAGCTATTTTGGGAGGCAAGCTTGATCTGGAGAGCGCACCATGGCCTTCAATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGTTGAATAATGACCCTAAGAAACGCATTACAGCTGCCGAAGCCCTTGAACACCCGTGGATGAAGGAAGGTGGTGAAGCATCTGACAAGCCTTTAGACAATGCTGTTTTGACTAGAATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTTATAGCAGAAAACCTTTCAGAGGAAGAAATAAAGGGTTTGAAACAAATGTTCAACAATATGGATACTGATCGCAGTGGCACAATCACATTCGAGGAACTCAAATCTGGATTGACCAAATTGGGATCCAAGCTTAGTGAATCAGAAATAAAGCAGCTAATGGACGCTGCTGATGTTGACAAAAGTGGTACTATTGACTATCAAGAATTCATCACTGCCACCATTAACCGGCATAAACTAGAGAAGGAAGAGAATTTGTTTAAGGCTTTTCAATACTTTGACAAGGATAGCAGTGGATATATAACAAGAGATGAGCTTAGACAAGCTTTGACTGAGTATCAAATGGGAGATGAAGCGACTATAGATGAAGTCATCGACGATGTTGACACTGATAACGACGGGAAAATTAATTACCAGGAGTTTGTGGCTATGATGAGAAAGGGGATCCTGGATATTGATGAGAAAGAGAAACCACAATAA

Predicted protein sequences of Glyma14g40090

Limit To All Plant Sequences

>Glyma14g40090.1   sequence type=predicted peptide   gene model=Glyma14g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLGMFKALFCCSKPHEIDIADSWDSSPDHTPKQHSKPKPKPNAAPTHSNNKQTTTSTQIGAILGKPYVNIHQMYEMKKELGSGQSGVTYLCVEKTTKREYACKSISRSKLLSTQEIEDVRREVMILQHLSGQPNIVEFRGAYEDKQNVHLVMELCSGGELFDRIIAKGNYSEREAATVMRQIVNVVHVCHFMGVMHRDLKPENFLLATNHPDAAVKATDFGLSIFIEEGIVYREIVGSAYYVAPEVLKRNYGKEIDVWSAGIILYILLSGVPPFWGENERSIFEAILGGKLDLESAPWPSISAAAKDLIRKMLNNDPKKRITAAEALEHPWMKEGGEASDKPLDNAVLTRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITFEELKSGLTKLGSKLSESEIKQLMDAADVDKSGTIDYQEFITATINRHKLEKEENLFKAFQYFDKDSSGYITRDELRQALTEYQMGDEATIDEVIDDVDTDNDGKINYQEFVAMMRKGILDIDEKEKPQ*

>Glyma14g40090.2   sequence type=predicted peptide   gene model=Glyma14g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHCFSKPSTNEIPINYDYSPPPHHYQPRPHSHSDSRRTQQPQLQPQPGYPNRTPKSDPSPSSSSFGDQVAARILDKPYFDIKSLYNLERELGRGQFGITRLCTEKTTGRKYACKSIPKRKLSKKKHTDDVKREVLILQHLSGQPNIVEFKGAYEDWQHVHLVMELCLGGELFDRITAKGSYSESEAASIFRQIVNVVHACHFMGVMHRDLKPENFLLANKDPKAPLKATDFGLSVFIEEGIVYREIVGSAYYVAPEVLKRNYGKEIDVWSAGIILYILLSGVPPFWGENERSIFEAILGGKLDLESAPWPSISAAAKDLIRKMLNNDPKKRITAAEALEHPWMKEGGEASDKPLDNAVLTRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITFEELKSGLTKLGSKLSESEIKQLMDAADVDKSGTIDYQEFITATINRHKLEKEENLFKAFQYFDKDSSGYITRDELRQALTEYQMGDEATIDEVIDDVDTDNDGKINYQEFVAMMRKGILDIDEKEKPQ*

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