Glyma14g39810 - SoyBase

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Report for Sequence Feature Glyma14g39810

Feature Type:	gene_model
Chromosome:	Gm14
Start:	48888100
stop:	48891528
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g39810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35090	AT	Annotation by Michelle Graham. TAIR10: catalase 2 \| chr4:16700937-16703215 REVERSE LENGTH=492	SoyBase	E_val: 0	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009648	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism	SoyBase	N/A	ISS
GO:0009970	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to sulfate starvation	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0010319	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: stromule	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0004096	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG0047	KOG	Catalase	JGI		ISS
PTHR11465	Panther	CATALASE	JGI		ISS
PF00199	PFAM	Catalase	JGI		ISS
PF06628	PFAM	Catalase-related immune-responsive	JGI		ISS
UniRef100_O48560	UniRef	Annotation by Michelle Graham. Best UniRef hit: Catalase-3 n=2 Tax=Glycine max RepID=CATA3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O48560	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalase-3 n=2 Tax=Glycine max RepID=CATA3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g39810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g39810

Paralog	Evidence	Comments
Glyma17g38140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g39810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g223500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g39810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g39810

Limit To All Plant Sequences

>Glyma14g39810.1   sequence type=CDS   gene model=Glyma14g39810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCCTACAAGAATCGGCCATCAAGCGCCTTCAATTCTCCCTTCTGGACTACTAATTCCGGTGCTCCCATCTGGAACAACAACTCATCGCTGACTGTTGGATCTAGAGGTCCAATTCTGCTGGAAGATTACCATCTGGTGGAGAAGCTTGCAAACTTTGACAGGGAACGGATCCCCGAACGTGTTGTCCATGCTCGTGGAGCTAGCGCAAAGGGTTTCTTTGAAGTCACGCATGACATTTCTCACCTCACATGTGCCGATTTCCTCCGAGCCCCTGGAGTTCAGACCCCTCTCATCGTCCGTTTCTCCACTGTTATCCACGAACGTGGCAGCCCTGAAACCCTCAGGGATCCCAGAGGTTTCGCTGTGAAATTCTACACTAGAGAGGGTAACTTCGACCTTGTGGGAAACAACTTCCCTGTCTTCTTCGTCCGCGATGGCCTCAAGTTTCCTGACATGGTCCATGCTCTCAAACCCAACCCCAAGTCCCACATCCAGGAGAATTGGAGGATCCTCGATTTCTTCTCCCACCATCCCGAAAGCCTTCACATGTTCTCCTTCTTATTCGATGACGTTGGTATCCCTCAAGATTACAGGCATATGGATGGTTTTGGTGTTAACACTTACACCCTTATCAACAAGGCTGGCAAAGCCGTCTATGTCAAATTTCATTGGAAAACCACCTGTGGCGAAAAGTGTCTCTTGGACGACGAGGCCATTAGGGTTGGAGGATCGAACCACAGTCATGCCACCCAAGACCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAACTCTACATCCAAACATTGGATCCCGAAAACGAAGACAGGCTTGACTTTGACCCCCTTGATGTAACTAAGACCTGGCCTGAGGACGTTTTGCCCCTCCAGCCTGTTGGCCGCATGGTCTTGAATAAGAACATTGATAACTTCTTTGCCGAGAACGAACAACTTGCATTTTGCCCTGCAATTATTGTACCTGGTGTATACTACTCCGACGATAAATTGCTTCAGACTCGCATATTCTCCTATGCTGATACCCAAAGACACAGACTTGGGCCAAATTATCTGCAGCTTCCTGCTAATTCCCCCAAGTGTGCCCATCACAACAATCACCATGATGGTTTCATGAATTTCATGCACAGGGATGAAGAGGTCAATTACTTCCCTTCAAGGTATGATCCTGTCCGTCACGCGGAAAGGGTCCCCGTTCCTCCACGTACCCTAGGTGGGAAGCGTGAAAAGTGCATGATTGAGAAGGAGAACAACTTCAAGCAACCTGGGGAGAGATACCGATCCTGGCCCTCTGACAGGCAAGAAAGATTTGTCCGCCGATGGGTTGATGCTTTGTCTGACCCACGTGTCACCCATGAAATCCGCAGCATCTGGATATCATACTGGTCTCAGGCTGATCGTTCTCTTGGACAAAAGATAGCATCTCACTTGAACTTGAAGCCAAGTATCTAA

Predicted protein sequences of Glyma14g39810

Limit To All Plant Sequences

>Glyma14g39810.1   sequence type=predicted peptide   gene model=Glyma14g39810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPYKNRPSSAFNSPFWTTNSGAPIWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGLKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDVGIPQDYRHMDGFGVNTYTLINKAGKAVYVKFHWKTTCGEKCLLDDEAIRVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTLDPENEDRLDFDPLDVTKTWPEDVLPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGVYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPANSPKCAHHNNHHDGFMNFMHRDEEVNYFPSRYDPVRHAERVPVPPRTLGGKREKCMIEKENNFKQPGERYRSWPSDRQERFVRRWVDALSDPRVTHEIRSIWISYWSQADRSLGQKIASHLNLKPSI*

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