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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G76660 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). | chr1:28769157-28771036 REVERS | SoyBase | E_val: 1.00E-167 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1MBX8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBX8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q10NF7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q10NF7_ORYSJ | SoyBase | E_val: 2.00E-68 | ISS |
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Glyma14g39740 not represented in the dataset |
Glyma14g39740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g38230 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g224200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g39740.2 sequence type=transcript gene model=Glyma14g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGCCAGCCATTGCTTTTCACTTGCATCTGTTACTCTTCGAGAACATTATGGACGACAAATAATTCCCACTTTCCGAAACCTAGTGAGTCATTTCAAACCCGCCCGAACTAAACTTGGACGGATCTGATGGCTAAACTATTAGTTTTCAAATCTTACCCCACAAAGTGTGCGAAAGAGATGGGGAGGATGTTGGGGTGCATTTTCTTGTTTTAATTCACAGAAAGGTGGGAAGCGCATTGTACCTGCATCTCGCATTCCTGACAGTAGTGGGCCAGCCTCTCAGCCAAATGGACCTCAAGTGATTGGGTTGACCAATCAAGCCACAGGACTAGCTCCTTCTCTCTTAGCCCCACCTTCTTCACCAGCATCCTTCACACATTCTGCCCTTCCTTCCACTGCACAATCACCTAGTTGTTTCTTATCCTTATCTGCTAACTCACCTGGTGGTCCTTCATCTACAATGTATGCCACAGGACCATATGCTCATGAAATGCAGCTGGTGTCTCCTCCAGTCTTTTCAAATTTCACTACTGAACCATCTACTGCACCTCTCACTCCTCCACCTGAGTTGGCTCATTTAACGACTCCCTCTTCCCCAGATGTACCTTTTGCTCATTTTCTCTCATCTTCAGTGGATCTCAAAAACAGTGACAAGGGTAACTACATCACTGCAAATGATCTTCAAGCTACATATTCACTCTACCCTGGAAGTCCTGCCAGTAGCCTTATATCTCCAATATCAAGGAACTCGGGTGACTGTTTATCATCTTCTTTTCCTGAACGAGAGTTCCGTCCACAGTGGGATTCATCACTATCTCCCGAGAATGGAAAGTATCAGAGAACTGGGTCTGGGAGGGTGTCAGGGCATGACACAAATGGTGTCACTATGGCATCACAAGATACAAATTTCTTTTGCCCTGCTACCTATGCACAATTCTATTTGGACCAAAATCCTCCATTTCCTCATAATGGTGGGAGATTAAGTGTTTCAAAAGATTCAGATGTTCAATCTAATGGCGGAAATGGACATCAGAGTAGGCATGCTAGAAGTCCTAAGCAAGATGTGGAAGAAATAGAAGCTTACCGAGCATCCTTTGGTTTCAGCGCAGATGAGATTATATCTACCAGTCAATATGTGGAAATTTCTGATGTAATGGAGGACTCATTTACCATGATGCCATTTGCTTCTGACAAGTCAACAATGGAAGAAAGCATAGAGCCTTCATTAATGAAAGGATTCAAAGCTCAGGAGACGCAGGTGGCATTGCAGAGTCTGAGAAGTCTTAGATCAGATCCAGGTCCAGTAGGCAAGGAAGCACACAATCAGGCCCCTATATGTCCAGGATGTGAAGATCATACATCACAAGGGCATTGTAGCAACAACTCTGGATTAAGTACACCAGAGAAACGTACTCTCGTAGATGATGAGGATATATTCTCAAAAATGGAATCTTCCAGAATCTGCAGGAAATATCAGATGGGGTTATCATGCTCTGATGCTGAGGTTGACTATAGGAGAGGAAGAAGCTTACGAGAAGGAAAGGGAATGTGATTTATGACACTAAGAATTAATCAGTTGAGAACAGATTGTATGTTATCTGTGTATTAATTTGTAGCTTTGTTTAAAAAAAAGAAAAGAAAAAGAAACTCTTTACTTGGGGTTGTCTAATAGATGGAATGACCTAACTTAGATCTAACCGATGGTGTTTGACCAGATCTTACTGATCAATGATTGTAGTCTCGTTCTTCAAGCGAGTTCAGATTAATGTTTGAAGTGAATGAAGTTTGATTTTAAACAACGGGCAGTGTATCAACCTGCATATGTTCCGACTTATAGGGCATACAAACTTTACACAAACCTCAACTCTTTTTAGCGCATTGGTGTAGGCATGGTAATTAAAAAAAAGTCTGTTTTGGCTGGATTTGGATTTTTCTTGATTCGTAAAAGCGGGAATGAGTTTGAGGATTTAATTATTCTCTTCCCGCAGTATCTGTTGTCAAAATGATAATTTATTG
>Glyma14g39740.1 sequence type=CDS gene model=Glyma14g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTCCGAGCAAAATCGATTTCCTCTGCACGAAAGGCGAAAGAGATGGGGAGGATGTTGGGGTGCATTTTCTTGTTTTAATTCACAGAAAGGTGGGAAGCGCATTGTACCTGCATCTCGCATTCCTGACAGTAGTGGGCCAGCCTCTCAGCCAAATGGACCTCAAGTGATTGGGTTGACCAATCAAGCCACAGGACTAGCTCCTTCTCTCTTAGCCCCACCTTCTTCACCAGCATCCTTCACACATTCTGCCCTTCCTTCCACTGCACAATCACCTAGTTGTTTCTTATCCTTATCTGCTAACTCACCTGGTGGTCCTTCATCTACAATGTATGCCACAGGACCATATGCTCATGAAATGCAGCTGGTGTCTCCTCCAGTCTTTTCAAATTTCACTACTGAACCATCTACTGCACCTCTCACTCCTCCACCTGAGTTGGCTCATTTAACGACTCCCTCTTCCCCAGATGTACCTTTTGCTCATTTTCTCTCATCTTCAGTGGATCTCAAAAACAGTGACAAGGGTAACTACATCACTGCAAATGATCTTCAAGCTACATATTCACTCTACCCTGGAAGTCCTGCCAGTAGCCTTATATCTCCAATATCAAGGAACTCGGGTGACTGTTTATCATCTTCTTTTCCTGAACGAGAGTTCCGTCCACAGTGGGATTCATCACTATCTCCCGAGAATGGAAAGTATCAGAGAACTGGGTCTGGGAGGGTGTCAGGGCATGACACAAATGGTGTCACTATGGCATCACAAGATACAAATTTCTTTTGCCCTGCTACCTATGCACAATTCTATTTGGACCAAAATCCTCCATTTCCTCATAATGGTGGGAGATTAAGTGTTTCAAAAGATTCAGATGTTCAATCTAATGGCGGAAATGGACATCAGAGTAGGCATGCTAGAAGTCCTAAGCAAGATGTGGAAGAAATAGAAGCTTACCGAGCATCCTTTGGTTTCAGCGCAGATGAGATTATATCTACCAGTCAATATGTGGAAATTTCTGATGTAATGGAGGACTCATTTACCATGATGCCATTTGCTTCTGACAAGTCAACAATGGAAGAAAGCATAGAGCCTTCATTAATGAAAGGATTCAAAGCTCAGGAGACGCAGGTGGCATTGCAGAGTCTGAGAAGTCTTAGATCAGATCCAGGTCCAGTAGGCAAGGAAGCACACAATCAGGCCCCTATATGTCCAGGATGTGAAGATCATACATCACAAGGGCATTGTAGCAACAACTCTGGATTAAGTACACCAGAGAAACGTACTCTCGTAGATGATGAGGATATATTCTCAAAAATGGAATCTTCCAGAATCTGCAGGAAATATCAGATGGGGTTATCATGCTCTGATGCTGAGGTTGACTATAGGAGAGGAAGAAGCTTACGAGAAGGAAAGGGAATGTGA >Glyma14g39740.2 sequence type=CDS gene model=Glyma14g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATGCCACAGGACCATATGCTCATGAAATGCAGCTGGTGTCTCCTCCAGTCTTTTCAAATTTCACTACTGAACCATCTACTGCACCTCTCACTCCTCCACCTGAGTTGGCTCATTTAACGACTCCCTCTTCCCCAGATGTACCTTTTGCTCATTTTCTCTCATCTTCAGTGGATCTCAAAAACAGTGACAAGGGTAACTACATCACTGCAAATGATCTTCAAGCTACATATTCACTCTACCCTGGAAGTCCTGCCAGTAGCCTTATATCTCCAATATCAAGGAACTCGGGTGACTGTTTATCATCTTCTTTTCCTGAACGAGAGTTCCGTCCACAGTGGGATTCATCACTATCTCCCGAGAATGGAAAGTATCAGAGAACTGGGTCTGGGAGGGTGTCAGGGCATGACACAAATGGTGTCACTATGGCATCACAAGATACAAATTTCTTTTGCCCTGCTACCTATGCACAATTCTATTTGGACCAAAATCCTCCATTTCCTCATAATGGTGGGAGATTAAGTGTTTCAAAAGATTCAGATGTTCAATCTAATGGCGGAAATGGACATCAGAGTAGGCATGCTAGAAGTCCTAAGCAAGATGTGGAAGAAATAGAAGCTTACCGAGCATCCTTTGGTTTCAGCGCAGATGAGATTATATCTACCAGTCAATATGTGGAAATTTCTGATGTAATGGAGGACTCATTTACCATGATGCCATTTGCTTCTGACAAGTCAACAATGGAAGAAAGCATAGAGCCTTCATTAATGAAAGGATTCAAAGCTCAGGAGACGCAGGTGGCATTGCAGAGTCTGAGAAGTCTTAGATCAGATCCAGGTCCAGTAGGCAAGGAAGCACACAATCAGGCCCCTATATGTCCAGGATGTGAAGATCATACATCACAAGGGCATTGTAGCAACAACTCTGGATTAAGTACACCAGAGAAACGTACTCTCGTAGATGATGAGGATATATTCTCAAAAATGGAATCTTCCAGAATCTGCAGGAAATATCAGATGGGGTTATCATGCTCTGATGCTGAGGTTGACTATAGGAGAGGAAGAAGCTTACGAGAAGGAAAGGGAATGTGA
>Glyma14g39740.1 sequence type=predicted peptide gene model=Glyma14g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSEQNRFPLHERRKRWGGCWGAFSCFNSQKGGKRIVPASRIPDSSGPASQPNGPQVIGLTNQATGLAPSLLAPPSSPASFTHSALPSTAQSPSCFLSLSANSPGGPSSTMYATGPYAHEMQLVSPPVFSNFTTEPSTAPLTPPPELAHLTTPSSPDVPFAHFLSSSVDLKNSDKGNYITANDLQATYSLYPGSPASSLISPISRNSGDCLSSSFPEREFRPQWDSSLSPENGKYQRTGSGRVSGHDTNGVTMASQDTNFFCPATYAQFYLDQNPPFPHNGGRLSVSKDSDVQSNGGNGHQSRHARSPKQDVEEIEAYRASFGFSADEIISTSQYVEISDVMEDSFTMMPFASDKSTMEESIEPSLMKGFKAQETQVALQSLRSLRSDPGPVGKEAHNQAPICPGCEDHTSQGHCSNNSGLSTPEKRTLVDDEDIFSKMESSRICRKYQMGLSCSDAEVDYRRGRSLREGKGM* >Glyma14g39740.2 sequence type=predicted peptide gene model=Glyma14g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYATGPYAHEMQLVSPPVFSNFTTEPSTAPLTPPPELAHLTTPSSPDVPFAHFLSSSVDLKNSDKGNYITANDLQATYSLYPGSPASSLISPISRNSGDCLSSSFPEREFRPQWDSSLSPENGKYQRTGSGRVSGHDTNGVTMASQDTNFFCPATYAQFYLDQNPPFPHNGGRLSVSKDSDVQSNGGNGHQSRHARSPKQDVEEIEAYRASFGFSADEIISTSQYVEISDVMEDSFTMMPFASDKSTMEESIEPSLMKGFKAQETQVALQSLRSLRSDPGPVGKEAHNQAPICPGCEDHTSQGHCSNNSGLSTPEKRTLVDDEDIFSKMESSRICRKYQMGLSCSDAEVDYRRGRSLREGKGM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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