Report for Sequence Feature Glyma14g39640
Feature Type: gene_model
Chromosome: Gm14
Start: 48695678
stop: 48697147
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma14g39640
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G74670 AT
Annotation by Michelle Graham. TAIR10: Gibberellin-regulated family protein | chr1:28053378-28053893 FORWARD LENGTH=101
SoyBase E_val: 9.00E-34 ISS
GO:0009739 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus
SoyBase N/A ISS
GO:0009740 GO-bp
Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009744 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus
SoyBase N/A ISS
GO:0009749 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus
SoyBase N/A ISS
GO:0009750 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus
SoyBase N/A ISS
GO:0010162 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed dormancy process
SoyBase N/A ISS
GO:0080167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to karrikin
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF02704 PFAM
Gibberellin regulated protein
JGI ISS
UniRef100_F1BXA4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gibberellic acid-stimulated protein 1 n=1 Tax=Glycine soja RepID=F1BXA4_GLYSO
SoyBase E_val: 2.00E-62 ISS
UniRef100_I1MBW9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBW9_SOYBN
SoyBase E_val: 1.00E-63 ISS
Expression Patterns of Glyma14g39640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma14g39640
Paralog Evidence Comments
Glyma02g41280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma14g39640 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.14g215600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma14g39640
Coding sequences of Glyma14g39640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma14g39640.1 sequence type=CDS gene model=Glyma14g39640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCACGTTCCTACAGTCCCACCATGGTTGCCCTCTCTTTGCTTCTTTTGGTCACATTCTCTAACGTAGCAGAGGCTTATACACGCAGTGGAACACTTCGTCCTTCAGATTGTAAACCAAGGTGTACTTACCGTTGCTCTGCAACTTCACACAAGAAGCCATGCATGTTTTTCTGCCAGAAGTGTTGTGCAAAATGCTTATGCGTTCCTCCTGGTACATATGGCAACAAGCAAGTTTGCCCTTGCTACAACAGCTGGAAGACCAAGGAAGGAGGACCCAAATGCCCTTAA
Predicted protein sequences of Glyma14g39640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma14g39640.1 sequence type=predicted peptide gene model=Glyma14g39640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAARSYSPTMVALSLLLLVTFSNVAEAYTRSGTLRPSDCKPRCTYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNSWKTKEGGPKCP*