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Report for Sequence Feature Glyma14g39560

Feature Type:gene_model
Chromosome:Gm14
Start:48651691
stop:48653040
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g39560
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G37670AT Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr5:14969035-14969448 FORWARD LENGTH=137 SoyBaseE_val: 1.00E-56ISS
GO:0000302GO-bp Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005782GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal matrix SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI ISS
PF00011PFAM Hsp20/alpha crystallin family JGI ISS
UniRef100_B0M1A7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal small heat shock protein n=1 Tax=Glycine max RepID=B0M1A7_SOYBN SoyBaseE_val: 1.00E-91ISS
UniRef100_C6TNH7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNH7_SOYBN SoyBaseE_val: 2.00E-99ISS

Expression Patterns of Glyma14g39560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g39560 not represented in the dataset
Glyma14g39560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g39560 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g214800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g39560
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g39560
>Glyma14g39560.1   sequence type=CDS   gene model=Glyma14g39560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGACGCTATCTTTGGATACCCTTTCAGACGCTTCATCTGGGGTCACCCTCCAATTTTCAGAGAATGGTCTGGCTCAATAGCCCTCTTAGATTGGCTCGAATCACCCACTGCCCACATCTTAAAAGTTAATGTTCCAGGATTCAGCAAGGAAGACATAAAGGTGCAGATTGAGGATGGGAATATTCTTCACATCAAAGGGGAAGGTGGGAGAGAGGAGCCTCAAGCAAAGGAGAAGGATACTGTTTGGCATGTGGCTGAGAGAAGCACTGGAAAGGGGGGTTTCTCAAGGGAAATTGAATTGCCAGAGAATGTGAAGGTGGATCAGATTAAGGCACAGGTGGAAAATGGAGTCCTCAGTATAGTTGTGCCTAAAGATGCAACACCCAAAACGCCTAAAGTGAGAAATATTAACATCACTAGCAGGCTTTAA
Predicted protein sequences of Glyma14g39560
>Glyma14g39560.1   sequence type=predicted peptide   gene model=Glyma14g39560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADAIFGYPFRRFIWGHPPIFREWSGSIALLDWLESPTAHILKVNVPGFSKEDIKVQIEDGNILHIKGEGGREEPQAKEKDTVWHVAERSTGKGGFSREIELPENVKVDQIKAQVENGVLSIVVPKDATPKTPKVRNINITSRL*






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