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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G66080 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF775 (InterPro:IPR008493); Has 285 Blast hits to 283 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 88; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr1:24600356-24601027 REVERSE LENGTH=190 | SoyBase | E_val: 1.00E-113 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4067 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12925 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF05603 | PFAM | Protein of unknown function (DUF775) | JGI | ISS | |
| UniRef100_G7KFW9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OPI10-like protein n=1 Tax=Medicago truncatula RepID=G7KFW9_MEDTR | SoyBase | E_val: 4.00E-118 | ISS |
| UniRef100_I1MBT0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBT0_SOYBN | SoyBase | E_val: 4.00E-135 | ISS |
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Glyma14g39250 not represented in the dataset |
Glyma14g39250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g40920 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g211800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g39250.2 sequence type=transcript gene model=Glyma14g39250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACCTAGTTAAACTGTGTTACAAATAGATAGACTGTCATAAGTAAAACATATTACATTAAATAAGATAGTGCCCCCCCATGTATATTCAGAATGTTCTGGACAAGGCATGATTTTTCTACTTGCTATCTTTCTATTTTTCTTTCCCTTTGAATCTATAGAACTAAAAAACACTTTAACCCCTGGGAGTGAGAATCTGCATCATCGAATTTTACAAGCACAAGCCACAATCCTCGCAAGGAACAGAACCGATAAATTCTCATCAACATGTTCGGAGTAGTTTTCCCGAACCGGAGCTTCCCCATGGACATCTCAACCTTCGCTCAAATCGACACCTTCCACTGGGTCCTCGACATGAACACCTTCGTAGGCGAGGCGTACGACCAGGTCCGCGAGCTCTGCATCTTCCTCCTCAACGGCTTCACGCTGCCGCCGGAGAAGGCGCTCGCCGTCTACATCCAGTCGCCGGGGTCGCCGTTCGTGTTCTGCGGCGCCGTCACGGTGGCGCGGCCCTCCGCCGTGCTGACGCTGGCGTGGCCGGAGCCAGGCGCCGGAGGGCCGCTGCAGCTGACGGCGGACGCGCAGCCGCTGTCGGCGAAGATCGGGGTGTCGGTGGAGGATCTGGCGTCGCTGCCGTCGCTCGACATGGCGGCGGAGAAGCGAATCGAGGGGCTGGCGATGAAGGTCGGAGAGAATCTTTTCAATTTCATGCAATCGTTTTGCGGCGTGGACGGGTCGAAGCTGGTTGTTCCGATGGATATCTTGGAGCGGTGGTTCAAGAAGTTTCAGGAACGGGCCAGGCGTGACCCTGAGTACTTGAAGGGTTTTGCTTTTGTGCCAAGAATGAGTACTGGAGAACTTCAAGTTGTGCACTTCGAAAATAGGTCAATGTCCCACCTTCACCAACTAATAGCATTGTCAAAATAATGTGCTGCATCATCAGTCTTTTAAATTCTCCTTTTCAGTGTATTATTCTGAAAAGCATACACAACCTTTTGTTTTGCTGAAGGAAGTTAATTTCCTTTTGTTGGAGGGGGTGGATCACTCTACACACTTGCTATATGGGAGTATTGATGCATAACAAGTCAGAGAAGTGAGTGAGTGATTTTTACTTGTTGATTGATAGTTGTACATGACACGAGACGAGGGGTGTATTATTGCACTAGAAGTCAGTGAAGTATTGTTTTGGCCAAGTATGATGTAGTGGACCATGATTTTTACTTGAACATGAGGCTTATG
>Glyma14g39250.1 sequence type=CDS gene model=Glyma14g39250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCGGAGTAGTTTTCCCGAACCGGAGCTTCCCCATGGACATCTCAACCTTCGCTCAAATCGACACCTTCCACTGGGTCCTCGACATGAACACCTTCGTAGGCGAGGCGTACGACCAGGTCCGCGAGCTCTGCATCTTCCTCCTCAACGGCTTCACGCTGCCGCCGGAGAAGGCGCTCGCCGTCTACATCCAGTCGCCGGGGTCGCCGTTCGTGTTCTGCGGCGCCGTCACGGTGGCGCGGCCCTCCGCCGTGCTGACGCTGGCGTGGCCGGAGCCAGGCGCCGGAGGGCCGCTGCAGCTGACGGCGGACGCGCAGCCGCTGTCGGCGAAGATCGGGGTGTCGGTGGAGGATCTGGCGTCGCTGCCGTCGCTCGACATGGCGGCGGAGAAGCGAATCGAGGGGCTGGCGATGAAGGTCGGAGAGAATCTTTTCAATTTCATGCAATCGTTTTGCGGCGTGGACGGGTCGAAGCTGGTTGTTCCGATGGATATCTTGGAGCGGTGGTTCAAGAAGTTTCAGGAACGGGCCAGGCGTGACCCTGAGTACTTGAAGGGTTTTGCTTTGTAA >Glyma14g39250.2 sequence type=CDS gene model=Glyma14g39250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCGGAGTAGTTTTCCCGAACCGGAGCTTCCCCATGGACATCTCAACCTTCGCTCAAATCGACACCTTCCACTGGGTCCTCGACATGAACACCTTCGTAGGCGAGGCGTACGACCAGGTCCGCGAGCTCTGCATCTTCCTCCTCAACGGCTTCACGCTGCCGCCGGAGAAGGCGCTCGCCGTCTACATCCAGTCGCCGGGGTCGCCGTTCGTGTTCTGCGGCGCCGTCACGGTGGCGCGGCCCTCCGCCGTGCTGACGCTGGCGTGGCCGGAGCCAGGCGCCGGAGGGCCGCTGCAGCTGACGGCGGACGCGCAGCCGCTGTCGGCGAAGATCGGGGTGTCGGTGGAGGATCTGGCGTCGCTGCCGTCGCTCGACATGGCGGCGGAGAAGCGAATCGAGGGGCTGGCGATGAAGGTCGGAGAGAATCTTTTCAATTTCATGCAATCGTTTTGCGGCGTGGACGGGTCGAAGCTGGTTGTTCCGATGGATATCTTGGAGCGGTGGTTCAAGAAGTTTCAGGAACGGGCCAGGCGTGACCCTGAGTACTTGAAGGGTTTTGCTTTTGTGCCAAGAATGAGTACTGGAGAACTTCAAGTTGTGCACTTCGAAAATAGGTCAATGTCCCACCTTCACCAACTAATAGCATTGTCAAAATAA
>Glyma14g39250.1 sequence type=predicted peptide gene model=Glyma14g39250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGVVFPNRSFPMDISTFAQIDTFHWVLDMNTFVGEAYDQVRELCIFLLNGFTLPPEKALAVYIQSPGSPFVFCGAVTVARPSAVLTLAWPEPGAGGPLQLTADAQPLSAKIGVSVEDLASLPSLDMAAEKRIEGLAMKVGENLFNFMQSFCGVDGSKLVVPMDILERWFKKFQERARRDPEYLKGFAL* >Glyma14g39250.2 sequence type=predicted peptide gene model=Glyma14g39250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGVVFPNRSFPMDISTFAQIDTFHWVLDMNTFVGEAYDQVRELCIFLLNGFTLPPEKALAVYIQSPGSPFVFCGAVTVARPSAVLTLAWPEPGAGGPLQLTADAQPLSAKIGVSVEDLASLPSLDMAAEKRIEGLAMKVGENLFNFMQSFCGVDGSKLVVPMDILERWFKKFQERARRDPEYLKGFAFVPRMSTGELQVVHFENRSMSHLHQLIALSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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