SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17290 | AT | Annotation by Michelle Graham. TAIR10: autophagy protein Apg5 family | chr5:5687160-5689821 REVERSE LENGTH=337 | SoyBase | E_val: 9.00E-160 | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0010150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf senescence | SoyBase | N/A | ISS |
| GO:0042594 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to starvation | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| KOG2976 | KOG | Protein involved in autophagy and nutrient starvation | JGI | ISS | |
| PTHR13040 | Panther | AUTOPHAGY PROTEIN APG5 RELATED | JGI | ISS | |
| PF04106 | PFAM | Autophagy protein Apg5 | JGI | ISS | |
| UniRef100_C6TBD1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TBD1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q3MQ10 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Autophagy protein 5 (Fragment) n=1 Tax=Glycine max RepID=Q3MQ10_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g39095 not represented in the dataset |
Glyma14g39095 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g40770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g210200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g39095.2 sequence type=transcript gene model=Glyma14g39095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAAAAATAATTAGAAGAACTAACGTGAGCGATTTTGTCTAACACTGATAGAAGAAGCGCAGTTAACGAAGGTATAAGACTGCAGAGAGACTGAGAGAGAAAGAGATCTGGAAGAAGAAATGAGTGAAGCGCAGAAGCACGTTTGGGAAGGGGCAATTCCTCTCCAGATTCACCTCCACGAATCCGAAGTCACCACTCTCCCTCCTCCTCCACCCGCTCTCGTGTTGGCACCTCGGCTAGGTTATTTGCCTTTGCTGATTTCGCTATTGAAGCCTCAGTTCAGCAGCACGCTTCCACCTGGAGTCGACACCATTTGGTTTGAGTACAAAGGCCTCCCTCTCAAGTGGTATATACCTACTGGAGTTCTTTTTGATCTTTTGTGCGTGGAGCCAGAGAGGCCGTGGAATTTAACGGTACACTTCAGAGGATATCCAAGTAATATTTTACTTCCCTGTGAAGGTGAAGACAGTGTAAAGTGGAGCTTTATTAACTCACTGAAAGAGGCTGCATATATAATAAATGGGAATAGCAAAAATGTGATGAACATGTCTCAAACTGATCAGGTGGAGCTCTGGGGCTCTGTTTTAAATGGTAATTTGGAAACTTATCGACGGGTGGCATCGAAGCTTAAGCTTGGAACTTTTGAAGATGAATATATGGAAAATGTTAGTTCAGTCTTGATTAAATCTCCACAAAGTCCAGGGGATACTGATGTTACGGGACAAGTGAAGACTGGATTCCTGTTCGTTTATATCTGTGGACTGTCAATGAGGAGTTTGATGATTTTGAAGATGCTCCACAAATTGATAATTGGGACAAAGTCTCATATATCAATCGACCTGTTGAGATTTATAAGGAAGATGGTAAATACTTTAGCTTAAATGATGCAGTTAAAAGAATATTGCCCGAGTTTTTTCCGGAAAATTCCTTTGTAACTGAAGGAGATGCAAACATCAACCAAATTGAAGAGGGAGAAAGTTCATCTGATCCAGGGTCATCTTGCAACACACTTGAGATTGCTGAAATCAAATTTGTACGCGTTCAAGGAATAGAACCAATTTTAGACATACCTTTTTCTTGGGTGGTTAACAACTTGATGAATCCCGAGTATTTTCTTCATATGTGTGTTTGCTTAAAAGTTTCAAAGTCCAATGCTGTGCAATAGGGATAATTTTAGTTATGTTGGACATTTTACTGGAAAAATCAGAAGGTGCAATTCTTTTGTACATATATGTACATAACGGTTTCATATCATATATTCATTTCATGATTCGATTGCTATTTTCCACTTCCAAGTGTAATAAATGTTGACAGATGATTATTTTTTAAATCCAATCAAGGGTACCGTTTCCCTGCATAATTG >Glyma14g39095.3 sequence type=transcript gene model=Glyma14g39095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAAAAATAATTAGAAGAACTAACGTGAGCGATTTTGTCTAACACTGATAGAAGAAGCGCAGTTAACGAAGGTATAAGACTGCAGAGAGACTGAGAGAGAAAGAGATCTGGAAGAAGAAATGAGTGAAGCGCAGAAGCACGTTTGGGAAGGGGCAATTCCTCTCCAGATTCACCTCCACGAATCCGAAGTCACCACTCTCCCTCCTCCTCCACCCGCTCTCGTGTTGGCACCTCGGCTAGGTTATTTGCCTTTGCTGATTTCGCTATTGAAGCCTCAGTTCAGCAGCACGCTTCCACCTGGAGTCGACACCATTTGGTTTGAGTACAAAGGCCTCCCTCTCAAGTGGTATATACCTACTGGAGTTCTTTTTGATCTTTTGTGCGTGGAGCCAGAGAGGCCGTGGAATTTAACGGTACACTTCAGAGGATATCCAAGTAATATTTTACTTCCCTGTGAAGGTGAAGACAGTGTAAAGTGGAGCTTTATTAACTCACTGAAAGAGGCTGCATATATAATAAATGGGAATAGCAAAAATGTGATGAACATGTCTCAAACTGATCAGGTAATTTGGAAACTTATCGACGGGTGGCATCGAAGCTTAAGCTTGGAACTTTTGAAGATGAATATATGGAAAATGTTAGTTCAGTCTTGATTAAATCTCCACAAAGTCCAGGGGATACTGATGTTACGGGACAAGTGAAGACTGGTAGGATTCCTGTTCGTTTATATCTGTGGACTGTCAATGAGGAGTTTGATGATTTTGAAGATGCTCCACAAATTGATAATTGGGACAAAGTCTCATATATCAATCGACCTGTTGAGATTTATAAGGAAGATGGTAAATACTTTAGCTTAAATGATGCAGTTAAAAGAATATTGCCCGAGTTTTTTCCGGAAAATTCCTTTGTAACTGAAGGAGATGCAAACATCAACCAAATTGAAGAGGGAGAAAGTTCATCTGATCCAGGGTCATCTTGCAACACACTTGAGATTGCTGAAATCAAATTTGTACGCGTTCAAGGAATAGAACCAATTTTAGACATACCTTTTTCTTGGGTGGTTAACAACTTGATGAATCCCGAGTATTTTCTTCATATGTGTGTTTGCTTAAAAGTTTCAAAGTCCAATGCTGTGCAATAGGGATAATTTTAGTTATGTTGGACATTTTACTGGAAAAATCAGAAGGTGCAATTCTTTTGTACATATATGTACATAACGGTTTCATATCATATATTCATTTCATGATTCGATTGCTATTTTCCACTTCCAAGTGTAATAAATGTTGACAGATGATTATTTTTTAAATCCAATCAAGGGTACCGTTTCCCTGCATAATTG
>Glyma14g39095.1 sequence type=CDS gene model=Glyma14g39095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGAAGCGCAGAAGCACGTTTGGGAAGGGGCAATTCCTCTCCAGATTCACCTCCACGAATCCGAAGTCACCACTCTCCCTCCTCCTCCACCCGCTCTCGTGTTGGCACCTCGGCTAGGTTATTTGCCTTTGCTGATTTCGCTATTGAAGCCTCAGTTCAGCAGCACGCTTCCACCTGGAGTCGACACCATTTGGTTTGAGTACAAAGGCCTCCCTCTCAAGTGGTATATACCTACTGGAGTTCTTTTTGATCTTTTGTGCGTGGAGCCAGAGAGGCCGTGGAATTTAACGGTACACTTCAGAGGATATCCAAGTAATATTTTACTTCCCTGTGAAGGTGAAGACAGTGTAAAGTGGAGCTTTATTAACTCACTGAAAGAGGCTGCATATATAATAAATGGGAATAGCAAAAATGTGATGAACATGTCTCAAACTGATCAGGTGGAGCTCTGGGGCTCTGTTTTAAATGGTAATTTGGAAACTTATCGACGGGTGGCATCGAAGCTTAAGCTTGGAACTTTTGAAGATGAATATATGGAAAATGTTAGTTCAGTCTTGATTAAATCTCCACAAAGTCCAGGGGATACTGATGTTACGGGACAAGTGAAGACTGGTAGGATTCCTGTTCGTTTATATCTGTGGACTGTCAATGAGGAGTTTGATGATTTTGAAGATGCTCCACAAATTGATAATTGGGACAAAGTCTCATATATCAATCGACCTGTTGAGATTTATAAGGAAGATGGTAAATACTTTAGCTTAAATGATGCAGTTAAAAGAATATTGCCCGAGTTTTTTCCGGAAAATTCCTTTGTAACTGAAGGAGATGCAAACATCAACCAAATTGAAGAGGGAGAAAGTTCATCTGATCCAGGGTCATCTTGCAACACACTTGAGATTGCTGAAATCAAATTTGTACGCGTTCAAGGAATAGAACCAATTTTAGACATACCTTTTTCTTGGGTGGTTAACAACTTGATGAATCCCGAGTATTTTCTTCATATGTGTGTTTGCTTAAAAGTTTCAAAGTCCAATGCTGTGCAATAG >Glyma14g39095.2 sequence type=CDS gene model=Glyma14g39095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGAAGCGCAGAAGCACGTTTGGGAAGGGGCAATTCCTCTCCAGATTCACCTCCACGAATCCGAAGTCACCACTCTCCCTCCTCCTCCACCCGCTCTCGTGTTGGCACCTCGGCTAGGTTATTTGCCTTTGCTGATTTCGCTATTGAAGCCTCAGTTCAGCAGCACGCTTCCACCTGGAGTCGACACCATTTGGTTTGAGTACAAAGGCCTCCCTCTCAAGTGGTATATACCTACTGGAGTTCTTTTTGATCTTTTGTGCGTGGAGCCAGAGAGGCCGTGGAATTTAACGGTACACTTCAGAGGATATCCAAGTAATATTTTACTTCCCTGTGAAGGTGAAGACAGTGTAAAGTGGAGCTTTATTAACTCACTGAAAGAGGCTGCATATATAATAAATGGGAATAGCAAAAATGTGATGAACATGTCTCAAACTGATCAGGTGGAGCTCTGGGGCTCTGTTTTAAATGGTAATTTGGAAACTTATCGACGGGTGGCATCGAAGCTTAAGCTTGGAACTTTTGAAGATGAATATATGGAAAATGTTAGTTCAGTCTTGATTAAATCTCCACAAAGTCCAGGGGATACTGATGTTACGGGACAAGTGAAGACTGGATTCCTGTTCGTTTATATCTGTGGACTGTCAATGAGGAGTTTGATGATTTTGAAGATGCTCCACAAATTGATAATTGGGACAAAGTCTCATATATCAATCGACCTGTTGAGATTTATAAGGAAGATGGTAAATACTTTAGCTTAA >Glyma14g39095.3 sequence type=CDS gene model=Glyma14g39095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGAAGCGCAGAAGCACGTTTGGGAAGGGGCAATTCCTCTCCAGATTCACCTCCACGAATCCGAAGTCACCACTCTCCCTCCTCCTCCACCCGCTCTCGTGTTGGCACCTCGGCTAGGTTATTTGCCTTTGCTGATTTCGCTATTGAAGCCTCAGTTCAGCAGCACGCTTCCACCTGGAGTCGACACCATTTGGTTTGAGTACAAAGGCCTCCCTCTCAAGTGGTATATACCTACTGGAGTTCTTTTTGATCTTTTGTGCGTGGAGCCAGAGAGGCCGTGGAATTTAACGGTACACTTCAGAGGATATCCAAGTAATATTTTACTTCCCTGTGAAGGTGAAGACAGTGTAAAGTGGAGCTTTATTAACTCACTGAAAGAGGCTGCATATATAATAAATGGGAATAGCAAAAATGTGATGAACATGTCTCAAACTGATCAGGTAATTTGGAAACTTATCGACGGGTGGCATCGAAGCTTAAGCTTGGAACTTTTGAAGATGAATATATGGAAAATGTTAGTTCAGTCTTGA
>Glyma14g39095.1 sequence type=predicted peptide gene model=Glyma14g39095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEAQKHVWEGAIPLQIHLHESEVTTLPPPPPALVLAPRLGYLPLLISLLKPQFSSTLPPGVDTIWFEYKGLPLKWYIPTGVLFDLLCVEPERPWNLTVHFRGYPSNILLPCEGEDSVKWSFINSLKEAAYIINGNSKNVMNMSQTDQVELWGSVLNGNLETYRRVASKLKLGTFEDEYMENVSSVLIKSPQSPGDTDVTGQVKTGRIPVRLYLWTVNEEFDDFEDAPQIDNWDKVSYINRPVEIYKEDGKYFSLNDAVKRILPEFFPENSFVTEGDANINQIEEGESSSDPGSSCNTLEIAEIKFVRVQGIEPILDIPFSWVVNNLMNPEYFLHMCVCLKVSKSNAVQ* >Glyma14g39095.2 sequence type=predicted peptide gene model=Glyma14g39095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEAQKHVWEGAIPLQIHLHESEVTTLPPPPPALVLAPRLGYLPLLISLLKPQFSSTLPPGVDTIWFEYKGLPLKWYIPTGVLFDLLCVEPERPWNLTVHFRGYPSNILLPCEGEDSVKWSFINSLKEAAYIINGNSKNVMNMSQTDQVELWGSVLNGNLETYRRVASKLKLGTFEDEYMENVSSVLIKSPQSPGDTDVTGQVKTGFLFVYICGLSMRSLMILKMLHKLIIGTKSHISIDLLRFIRKMVNTLA* >Glyma14g39095.3 sequence type=predicted peptide gene model=Glyma14g39095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEAQKHVWEGAIPLQIHLHESEVTTLPPPPPALVLAPRLGYLPLLISLLKPQFSSTLPPGVDTIWFEYKGLPLKWYIPTGVLFDLLCVEPERPWNLTVHFRGYPSNILLPCEGEDSVKWSFINSLKEAAYIINGNSKNVMNMSQTDQVIWKLIDGWHRSLSLELLKMNIWKMLVQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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