SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30520 | AT | Annotation by Michelle Graham. TAIR10: Phototropic-responsive NPH3 family protein | chr2:13002920-13005573 REVERSE LENGTH=593 | SoyBase | E_val: 0 | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phototropism | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009954 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proximal/distal pattern formation | SoyBase | N/A | ISS |
| GO:0010227 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ abscission | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
| PTHR24413 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24413:SF171 | Panther | JGI | ISS | ||
| PF00651 | PFAM | BTB/POZ domain | JGI | ISS | |
| PF03000 | PFAM | NPH3 family | JGI | ISS | |
| UniRef100_G7K0V9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Root phototropism protein n=1 Tax=Medicago truncatula RepID=G7K0V9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MBM0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBM0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g38640 not represented in the dataset |
Glyma14g38640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g40360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g206100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g38640.1 sequence type=CDS gene model=Glyma14g38640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACCCCCAACCCTACCAGATTCTCCCTTGCCATGGAGAGAACCGGGCAATGGGTTTTCTCCCCAGAAATCCCAACCGATGTTATTGTTGCAGTTGGAGAATCCACTTTTTCTCTCCATAAGTTTATTCTGGCGGCTAAGAGTAACTACATCAGAAAAGTGATAATGGAATCAGAGGAGAGTGACCTAACAAGAATAGAGATTTCCAACATACCTGGAGGACAAGAAGCTTTTGAGAAAGCCGCGAAATTCTGTTACGGCGTTAACTTCGAGATCACCGTTCACAACGTGGCGGCGCTGCACTGCGCCGCCGTGTTCCTCCAGATGACCGACGAGTATTGCGACGGAAACCTTGCCGGAAGGACGGAGGACTTCCTCTCTCAGGTCGGCCTCTCCACGCTCCATAGCGCCGTCGCGGTTCTCAAGTCCTGCCAAAAGCTCCTCCCCTTCGCCGTCGAGGTCAACATCGTTGACCGATGCGTTGAGTTCATCAGCTCCAAGGCTTGCAGCGAGGCGAATTTCCCAAGCCAGTCGCCGCCGAACTGGTGGACGGAGGAGCTCGCCGTGCTCGACGTGGATTCCTTTGCAAAGGTGATCACCGCGATGAAGCAGCGTGGCGCAAAGTACTTGACCGTCGCCGGAGCGTTGATTACGTACACCGAACGCGCGCTGAGGGAGCTCGTCAGGGATCAGACCGGCGGTGGAAAAGGAATCCGGTCACCGGAATCCGGAGACTCGGATTCGGAGTCGAAAAGAAGCGAACAGCGCGAGCTTCTGCAGGCTATCGTTCCTCTCTTTCCGACGGAGAAAGCGGCGTTTCCGGTCAACTTCCTCTGCTGCCTCCTGCGGTGCGCGATCTACCTCCGCGCGTCGAGCGTGTGCAAGCGCGAGCTCGAGAAGCGCGTGACGGAGATTCTCGAGCACGTAACCGTGGACGACCTTCTGGTGCTCACGTTCTCCTACGACGGCGAGAGGCTCTTGGATCTGGACAGCGTGAGGAGAATTATCTCCGGTTTTGTGGAGAGGGAGAAGAGTACGACGGTGTTCAATGCCGGCGTCAACTTCAACGAGGACTTCTCCGCCGCGATGCAGCGCGTGGTGAAAACCGTCGACACGTATCTCGCCGAGATCGCCGCGTACGGCGAACTCTCCATCTCGAAATTCAACGGCATCGCAATCCTCATTCCCAAAGGCTCGAGAAAATCCGACGACGATCTATACCGCGCCGTCGATATCTACCTCAAGGTGCACCCGAACCTGGACGAGATAGAGAAGGAGAAAGTGTGCAGCGTATTGGACCCGTTAAAATTGTCCTACGAGGCGCGTGTGCACGCGTCAAAGAACAAGCGCTTGCCGCTGCAGATCGTGCTTCACGCGCTGTACTACGATCAGCTACATATAAGGAGCGGGACGGCGGAGGAAAAGGTGGCGCTGGCGGTGGCGGAGAAAAAACAGCTGCAAGCTGACGTGTCCTTGGTGAGGGAGAACGAGGAGTTGCGGTCGGAGCTGATGAAGATGAAAATGTTCATTTCCGATATGCAGAAACATGGGCACGGAACGTCGTCGTCTGGAAGGGAGAATATTGGGCTCGCTAAAAAGCCCACGTTCTTCTCGTCCATGTCCAAGAAACTGAGCAAGTTGAACCCGTTCAAAAATGGGTCCAAGGACACGTCACACATTGATGATGCCCCTGTGGACTTGACCAAGCCCAGAAGGAGAAGGTTCTCCATTTCCTAG
>Glyma14g38640.1 sequence type=predicted peptide gene model=Glyma14g38640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATPNPTRFSLAMERTGQWVFSPEIPTDVIVAVGESTFSLHKFILAAKSNYIRKVIMESEESDLTRIEISNIPGGQEAFEKAAKFCYGVNFEITVHNVAALHCAAVFLQMTDEYCDGNLAGRTEDFLSQVGLSTLHSAVAVLKSCQKLLPFAVEVNIVDRCVEFISSKACSEANFPSQSPPNWWTEELAVLDVDSFAKVITAMKQRGAKYLTVAGALITYTERALRELVRDQTGGGKGIRSPESGDSDSESKRSEQRELLQAIVPLFPTEKAAFPVNFLCCLLRCAIYLRASSVCKRELEKRVTEILEHVTVDDLLVLTFSYDGERLLDLDSVRRIISGFVEREKSTTVFNAGVNFNEDFSAAMQRVVKTVDTYLAEIAAYGELSISKFNGIAILIPKGSRKSDDDLYRAVDIYLKVHPNLDEIEKEKVCSVLDPLKLSYEARVHASKNKRLPLQIVLHALYYDQLHIRSGTAEEKVALAVAEKKQLQADVSLVRENEELRSELMKMKMFISDMQKHGHGTSSSGRENIGLAKKPTFFSSMSKKLSKLNPFKNGSKDTSHIDDAPVDLTKPRRRRFSIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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