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Report for Sequence Feature Glyma14g38600

Feature Type:gene_model
Chromosome:Gm14
Start:47741146
stop:47746079
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g38600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20920AT Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 2 beta subunit | chr5:7094994-7096661 REVERSE LENGTH=268 SoyBaseE_val: 3.00E-135ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0006413GO-bp Annotation by Michelle Graham. GO Biological Process: translational initiation SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG2768 KOG Translation initiation factor 2, beta subunit (eIF-2beta) JGI ISS
PTHR23001Panther EUKARYOTIC TRANSLATION INITIATION FACTOR JGI ISS
PTHR23001:SF3Panther SUBFAMILY NOT NAMED JGI ISS
PF01873PFAM Domain found in IF2B/IF5 JGI ISS
UniRef100_G7K0U8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 2 subunit n=1 Tax=Medicago truncatula RepID=G7K0U8_MEDTR SoyBaseE_val: 3.00E-145ISS
UniRef100_I1MBL6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBL6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g38600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g38600
ParalogEvidenceComments
Glyma02g40310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g38600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g205500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g38600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g38600
>Glyma14g38600.1   sequence type=CDS   gene model=Glyma14g38600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAATTGTTCCTTTTGATCCTACCAAGAAGAAGAAGAAGAAGAAAATTACAATTGTAGATCCTGCTGATGAACCTGTGGAGAAATTGGCTGAGAAGACAGAAAACCTCTCAGTTTCCGAGGGGGTTGAGACTGCATTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCTGTTGAAATGGGTAACTTGAATGATGAGAGTGGAGATGCAATTGAAGATTTGGATGATCACCCTGAAGATGATGAAGGAGAAATGGTTGTTCCCCAGGCTCGTTATCCTTGGGAAGGGAGTGATCGTAATTATGAATATGAGGAGCTGCTTGGCAGGGTGTTTAACATTCTACGTGAAAATAATCCTGAACTTGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAGGGCACAAAGAAAACTGTGTTTGTCAATTTTATGGATCTATGCAAAACGATGCATCGGCAGCCAGACCATGTCATGGCCTTCTTGCTTGCTGAATTGGGTACAAGTGGCTCCCTTGATGGACAGCAGAGATTGGTTGTAAAGGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAGTGTGGATCAGGAAGATCAGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGAAGGAACACAGGGACATAG
Predicted protein sequences of Glyma14g38600
>Glyma14g38600.1   sequence type=predicted peptide   gene model=Glyma14g38600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADEPVEKLAEKTENLSVSEGVETAFTGLKKKKKKPVEMGNLNDESGDAIEDLDDHPEDDEGEMVVPQARYPWEGSDRNYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT*






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