SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23140 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein with ARM repeat domain | chr2:9845696-9848762 REVERSE LENGTH=826 | SoyBase | E_val: 1.00E-136 | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005871 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0019894 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinesin binding | SoyBase | N/A | ISS |
| KOG4646 | KOG | Uncharacterized conserved protein, contains ARM repeats | JGI | ISS | |
| PTHR23315 | Panther | BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING | JGI | ISS | |
| PF00514 | PFAM | Armadillo/beta-catenin-like repeat | JGI | ISS | |
| UniRef100_B9SG36 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SG36_RICCO | SoyBase | E_val: 7.00E-144 | ISS |
| UniRef100_I1MBJ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MBJ4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g38240 not represented in the dataset |
Glyma14g38240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g40051 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g202000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g38240.1 sequence type=CDS gene model=Glyma14g38240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCTATCGAACAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTCGGAAATTATTGGAGCAGTTAAAGTGCGATTCTGTTCATTGTAAGAGAGAGGCAACAGCAGAACTCCACCTTCTTGCTAAGGAAAATATGGATAACCGAATTGTGATCTCGAATTGTGGAGCCATTAGCTTAATAGTCGATTTACTGCAATCAACGGATACTACAATCCAGGAACATTCTGTTACAACACTTCTTAACTTATCAATCAATGATAACAACAAAGCTGCTATTGCTAATGCTGGTGCAATTGAACCTTTGATTCACGTCCTTCAGATAGGGAGTCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTATCAGTTACTGAGGAAAACAAGATCAGGATAGGCAGGGCTGGGGCAATTAGACCACTGGTTGATTTATTAGGGAATGGGACCCCTAGAGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCATTATTTCATGAAAACAAGGATCGGATTGTGCAAGCTGGTGCTGTGAAAAACCTTGTAGATTTAATGGACCTGGCAGCCGGAATGGTTGATAAGGTAGTGGCTGTTTTAGCAAATCTTGCTACGATACCAGAAGGGAAAACAGCAATTGGTCAGCAAGGTGGCATTCCTGTTTTGGTTGAAGTTATCGAGTCGGGTTCTGCGAGAGGAAAAGAGAATGCAGCAGCAGCTCTTCTACATCTATGCTCAGACAATCATAGATACTTAAACATGGTGCTCCAAGAAGGAGCTGTGCCCCCTTTAGTAGCATTGTCACAATCAGGCAAGGGCCAAAGAAAAGAA
>Glyma14g38240.1 sequence type=predicted peptide gene model=Glyma14g38240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high SYRTRADLSAAETQVRKLLEQLKCDSVHCKREATAELHLLAKENMDNRIVISNCGAISLIVDLLQSTDTTIQEHSVTTLLNLSINDNNKAAIANAGAIEPLIHVLQIGSPEAKENSAATLFSLSVTEENKIRIGRAGAIRPLVDLLGNGTPRGKKDAATALFNLSLFHENKDRIVQAGAVKNLVDLMDLAAGMVDKVVAVLANLATIPEGKTAIGQQGGIPVLVEVIESGSARGKENAAAALLHLCSDNHRYLNMVLQEGAVPPLVALSQSGKGQRKE
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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