SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32210 | AT | Annotation by Michelle Graham. TAIR10: Defender against death (DAD family) protein | chr1:11606047-11607652 REVERSE LENGTH=115 | SoyBase | E_val: 2.00E-66 | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1746 | KOG | Defender against cell death protein/oligosaccharyltransferase, epsilon subunit | JGI | ISS | |
| PTHR10705 | Panther | DEFENDER AGAINST CELL DEATH | JGI | ISS | |
| PF02109 | PFAM | DAD family | JGI | ISS | |
| UniRef100_I1MBJ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBJ2_SOYBN | SoyBase | E_val: 1.00E-95 | ISS |
| UniRef100_Q39080 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 n=1 Tax=Arabidopsis thaliana RepID=DAD1_ARATH | SoyBase | E_val: 7.00E-64 | ISS |
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Glyma14g38220 not represented in the dataset |
Glyma14g38220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g201900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g38220.2 sequence type=transcript gene model=Glyma14g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTTAGGGCCTAAGCCCAAGAGAGAGAGATTGAAAAAAATCCATTTGACAAAAATCCATTTGACTTTAGAGGTTGGTGACTTTGTGCGTTGAAGTTATAGAGAGAGAGGAGTTTGGAGAGAAGAGTGAAGAAGGCAAATCGCGAAGACTAGATCTGATCTGAGAGAATGGCTCCTCGGTCTAGCAGCAAGGACGCCCAAGACCTTTTCCGCGCTCTTTGGTCTGCTTATGCTGCAACCCCCACTAATCTCAAGATCATTGATCTCTATGTCATCTATGCCGTATTCACCGCTTTCATCCAGGTTGTTTACATGGCTTTGGTTGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTTTGTCTCAGGATCCAAGTGAATAAAGAGAATAAGGAATTCAAGGATCTTGCACCTGAGCGCGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAAATTGGGTTTGTGTGGCGGTTGTTGTTTCTGATTGAACCCTTGGATAATAAAAATTAAATAGTAGTATACCTAGACTTTTGTAATAGTATTTATAGACAGTAGCCGGCATTCTACTAATTGCTTTAGCTTTATGTTGATTACCCCCACCTCCCATTTTTGGTTCCCTGTTTTGAACGAAGAGATTTTGCCATCTTTTGAAGTTTAAAGTACTTTTGAATGGCGAAATAAAGAAGGTATTGTTATTATTCACATGGATATCTAGATCTGAGCACTAGTCCAAAACACTCAGAAATTGGCAAATTGTAGTCTTCTTTGAAAATAAAATGATGATTAATGGTCGCAGAACACTCCTGTCTGTCTCGATCTTGTACAGAAGGAATTTATAATTTTTTGTGTGAAGTCAACTTTTTGGACATTACAGGAGACCAAGAATAATATATTGCAGCTGATACCATGGTGATGCTTTCAAAAGAGCAAACGAAAAGTTGTTTGTATGCTTTAGCACAAGGCATATGATATATATACACTGATGAAAATGAAAACAATAAATCGAATGTTTGGCCATGAATTAGTATCTATGACATATTGCCTTTAATCTTTATTGACCAAAAAGATTCAGGAACTCAAGTTGCTTATAATGTAACAAAATTCATGTAAATATTTCCATCCTTCATAGTTCATCGTGCCCCTTCTCACTCCTTTTCCAATGTCCCTTTGCAGAACATCATTGATAAATTCAAACACTGGTCAAGGCTTCACACTGACTTTGACCTTGACATTTCCCATCATCAACACACAAAGAACATGAACACCTTTCGTCCTCCTCACACAGTACGCTCATCCTTCCATTAACCTTCTCCAAAAAGCCATGGCACCCTTCCCCCTTTAAACCACCTTGAGACAGCAGTAGAGCACAAAAGAGGAAAAAAAAGCCACGAGAAAAACAAATCCAATTTGAAGGGATTCAAGAAACGGGACACCAATTTGTATTACACTCCTCAAGCCTCAATCATTTACACTCTGTTTATGAACTCATGTCAGTAAATAATTGCATTCATTTAAACCAGTGGGTAATCCGTGCATTCACACGGGTCACACACACATTCATTGTTTGTATGCATGTTTATAAATGATTTATATGAAAAAATATTTTATAT
>Glyma14g38220.1 sequence type=CDS gene model=Glyma14g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCTCGGTCTAGCAGCAAGGACGCCCAAGACCTTTTCCGCGCTCTTTGGTCTGCTTATGCTGCAACCCCCACTAATCTCAAGGTCCCTACATTATTCTTGTTTTTTCCACTCTTTCTCTCTTTTCCTAACCCTAATTTTACTCTTTCTTTCTTTCAGATCATTGATCTCTATGTCATCTATGCCGTATTCACCGCTTTCATCCAGGTTGTTTACATGGCTTTGGTTGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTTTGTCTCAGGATCCAAGTGAATAAAGAGAATAAGGAATTCAAGGATCTTGCACCTGAGCGCGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAA >Glyma14g38220.2 sequence type=CDS gene model=Glyma14g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCTCGGTCTAGCAGCAAGGACGCCCAAGACCTTTTCCGCGCTCTTTGGTCTGCTTATGCTGCAACCCCCACTAATCTCAAGATCATTGATCTCTATGTCATCTATGCCGTATTCACCGCTTTCATCCAGGTTGTTTACATGGCTTTGGTTGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTTTGTCTCAGGATCCAAGTGAATAAAGAGAATAAGGAATTCAAGGATCTTGCACCTGAGCGCGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAA
>Glyma14g38220.1 sequence type=predicted peptide gene model=Glyma14g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPRSSSKDAQDLFRALWSAYAATPTNLKVPTLFLFFPLFLSFPNPNFTLSFFQIIDLYVIYAVFTAFIQVVYMALVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIMNFLG* >Glyma14g38220.2 sequence type=predicted peptide gene model=Glyma14g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPRSSSKDAQDLFRALWSAYAATPTNLKIIDLYVIYAVFTAFIQVVYMALVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIMNFLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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