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Report for Sequence Feature Glyma14g38010

Feature Type:gene_model
Chromosome:Gm14
Start:47231177
stop:47234695
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38470AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 33 | chr2:16108476-16110539 FORWARD LENGTH=519 SoyBaseE_val: 5.00E-109ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010120GO-bp Annotation by Michelle Graham. GO Biological Process: camalexin biosynthetic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0010508GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of autophagy SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0034605GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to heat SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0070370GO-bp Annotation by Michelle Graham. GO Biological Process: cellular heat acclimation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_B2G284UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA-binding protein n=1 Tax=Vitis thunbergii RepID=B2G284_9ROSI SoyBaseE_val: 0ISS
UniRef100_I1MBH2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=3 Tax=Glycine max RepID=I1MBH2_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
WRKY49 WRKY Transcription Factor

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g39870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g200200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g38010.2   sequence type=transcript   gene model=Glyma14g38010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCAATAGAAACCAAAGCATTGTGCCATACATACGTAACTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTTTATATTAAAGCTTTCCATTTCTTAGTTTCAAAAAATTTTCTTTTTCTCTCCACAGACCCCTCTCATGGCATCTTCTTCTGGTAGTTTAGACACCTCTGCAAGTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCTTTCATGACCACTTCTTTCTCTGACCTCCTTGCTTCTCCCTTGGACAACAACAAGCCACCACAGGGTGGTTTGTCTGAGAGAACTGGCTCTGGTGTTCCCAAATTCAAGTCCACACCACCACCTTCTCTGCCTCTCTCTCCCCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCGCCGGTTCTCCTTAATTCTTCCAACATTCTGCCATCTCCAACAACTGGAGCATTTGTTGCTCAGAGCTTCAATTGGAAGAGCAGTTCAGGGGGGAATCAGCAAATTGTCAAGGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAAACCCGATCAGGACCTCCTGCTTCATCCACAGCAACATACCAGTCTTCAAATGTCACAGTTCAAACACAACAGCCATGGAGTTTTCAGGAGGCCACGAAACAGGATAATTTTTCCTCAGGAAAGGGTATGATGAAAACTGAAAACTCTTCTTCCATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCCGATTATGGCAATTACCCCCCACAATCTCAGACTTTAAGTAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGTCAAAAACAAGTGAAGGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCCAATTGCCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCTAAGCCTCAAAATACTAGGAGAAACTCATCAAACTCCTCTTCTCTTGCAATCCCTCATTCAAATTCCATCAGGACTGAAATCCCAGATCAATCCTATGCCACACATGGAAGTGGACAAATGGATTCAGCTGCCACCCCAGAAAACTCATCAATATCAATTGGAGATGATGATTTTGAGCAGAGTTCCCAAAAGTGTAAATCAGGAGGGGATGAATATGATGAAGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGTGAAAATGAGGGTATGTCAGCCCCTGGAAGTAGAACAGTGAGAGAACCTAGAGTTGTAGTTCAGACAACCAGTGACATTGATATCCTTGATGATGGCTATAGGTGGAGAAAATACGGGCAGAAAGTAGTGAAGGGCAATCCAAATCCAAGGTAAAAAAAGAAACACACTCTTTAGATCTTACTTTTGTCCAACTTTTTGAAAGATTTTATACTTTGAAGTTCCATTAAGAAAGAGTAAATTGAGAATCCCATTAAGGAATTCCTCACTCTCTTGCTAATAATAATATAAAGTGTTTAATGTAAAAAGCATGTTAAAGAGTTTTCCATTCTCGATCAATCAGAATTTATAATAGGTAAGAATTGTAAGGTACTAGTAGTTCTTATTCTTATAGGAAGTTAACAACTTACCATATATGACAATTGTAAATGCATATACTATTTTCTCTAATGTAAATGTGGTAAAAACATTATAGCTGCATGATGGCTTCTATTTCTTTGTCTACATCTTTTCAAACCTTACAATGACTTTTTTTTTTTGTTGAAATTCTCCAGTACACTATAACTTGTACCAGTTTTCCTTTTCCATGTCTAGAATTCCTTGGTCAAATTTGGCAACTTTCGTTTTTCCAATGTGTCCATGTGATTTAGAAGAATAATAGTACTCCTAGATTAGCCTGTCTAATATTGTGCTAAACTTGTGACATGTAGGAGTTACTACAAGTGCACACACCCAGGATGTCCAGTGAGGAAGCACGTGGAAAGAGCCTCACATGACCTAAGGGCTGTGATCACAACTTATGAGGGAAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGCAGCCATTCTGTTAACAGACCAATGCCAAACAATGCTTCAAACCACACCAACACTGCAGCCACTTCCGTAAGGCTCTTGCCAGTGATCCACCAAAGTGACAATTCCCTTCAGAACCAAAGATCACAAGCACCACCAGAAGGGCAATCACCCTTCACCCTAGAGATGCTACAAAGTCCAGGAAGTTTTGGATTCTCAGGGTTTGGGAATCCAATGCAATCTTACGTGAACCAGCAGCAACTATCTGACAATGTTTTCTCCTCCAGGACCAAGGAGGAGCCTAGAGATGACATGTTCCTTGAGTCTCTACTATGCTGAAGGAATTTTTTTTTTCCCTTTTTGGTAGCTATGGAAGGTTGGAAATTTTGGAAGTGGGGGACTAGGATTTATTGGACAAATAAGGTTCCATTCGATTTATTGCATTTTTTGGTTTGTTTTGTTGTAAATTTTATACAGCCACAGGATTGGTATAGTATATACTAGTATTTCATAACTGTTGTATGCTTTTACACATGGTGTTGGTGAAATTTTTTTATTACTTTGGGGTTTCTCTTTTAGTTGGGAGGAGAACCTCATATTAATCTTTTGTAAGATTCTGTTGATTTTTTTCCTGTCTTCACAATTGTTCACTACCAAAATAGTATTGTTTCATAAGAAATGTGATTTTTTTTGTTAAACATCATGTCATGGTACATGGATTACATTTACACATAATAGTCATCATTTATATATGGTCTATAATGGGGC

>Glyma14g38010.1   sequence type=CDS   gene model=Glyma14g38010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCTTCTGGTAGTTTAGACACCTCTGCAAGTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCTTTCATGACCACTTCTTTCTCTGACCTCCTTGCTTCTCCCTTGGACAACAACAAGCCACCACAGGGTGGTTTGTCTGAGAGAACTGGCTCTGGTGTTCCCAAATTCAAGTCCACACCACCACCTTCTCTGCCTCTCTCTCCCCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCGCCGGTTCTCCTTAATTCTTCCAACATTCTGCCATCTCCAACAACTGGAGCATTTGTTGCTCAGAGCTTCAATTGGAAGAGCAGTTCAGGGGGGAATCAGCAAATTGTCAAGGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAAACCCGATCAGGACCTCCTGCTTCATCCACAGCAACATACCAGTCTTCAAATGTCACAGTTCAAACACAACAGCCATGGAGTTTTCAGGAGGCCACGAAACAGGATAATTTTTCCTCAGGAAAGGGTATGATGAAAACTGAAAACTCTTCTTCCATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCCGATTATGGCAATTACCCCCCACAATCTCAGACTTTAAGTAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGTCAAAAACAAGTGAAGGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCCAATTGCCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCTAAGCCTCAAAATACTAGGAGAAACTCATCAAACTCCTCTTCTCTTGCAATCCCTCATTCAAATTCCATCAGGACTGAAATCCCAGATCAATCCTATGCCACACATGGAAGTGGACAAATGGATTCAGCTGCCACCCCAGAAAACTCATCAATATCAATTGGAGATGATGATTTTGAGCAGAGTTCCCAAAAGTGTAAATCAGGAGGGGATGAATATGATGAAGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGTGAAAATGAGGGTATGTCAGCCCCTGGAAGTAGAACAGTGAGAGAACCTAGAGTTGTAGTTCAGACAACCAGTGACATTGATATCCTTGATGATGGCTATAGGTGGAGAAAATACGGGCAGAAAGTAGTGAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGCACACACCCAGGATGTCCAGTGAGGAAGCACGTGGAAAGAGCCTCACATGACCTAAGGGCTGTGATCACAACTTATGAGGGAAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGCAGCCATTCTGTTAACAGACCAATGCCAAACAATGCTTCAAACCACACCAACACTGCAGCCACTTCCGTAAGGCTCTTGCCAGTGATCCACCAAAGTGACAATTCCCTTCAGAACCAAAGATCACAAGCACCACCAGAAGGGCAATCACCCTTCACCCTAGAGATGCTACAAAGTCCAGGAAGTTTTGGATTCTCAGGGTTTGGGAATCCAATGCAATCTTACGTGAACCAGCAGCAACTATCTGACAATGTTTTCTCCTCCAGGACCAAGGAGGAGCCTAGAGATGACATGTTCCTTGAGTCTCTACTATGCTGA

>Glyma14g38010.2   sequence type=CDS   gene model=Glyma14g38010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCTTCTGGTAGTTTAGACACCTCTGCAAGTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCTTTCATGACCACTTCTTTCTCTGACCTCCTTGCTTCTCCCTTGGACAACAACAAGCCACCACAGGGTGGTTTGTCTGAGAGAACTGGCTCTGGTGTTCCCAAATTCAAGTCCACACCACCACCTTCTCTGCCTCTCTCTCCCCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCGCCGGTTCTCCTTAATTCTTCCAACATTCTGCCATCTCCAACAACTGGAGCATTTGTTGCTCAGAGCTTCAATTGGAAGAGCAGTTCAGGGGGGAATCAGCAAATTGTCAAGGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAAACCCGATCAGGACCTCCTGCTTCATCCACAGCAACATACCAGTCTTCAAATGTCACAGTTCAAACACAACAGCCATGGAGTTTTCAGGAGGCCACGAAACAGGATAATTTTTCCTCAGGAAAGGGTATGATGAAAACTGAAAACTCTTCTTCCATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCCGATTATGGCAATTACCCCCCACAATCTCAGACTTTAAGTAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGTCAAAAACAAGTGAAGGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCCAATTGCCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCTAAGCCTCAAAATACTAGGAGAAACTCATCAAACTCCTCTTCTCTTGCAATCCCTCATTCAAATTCCATCAGGACTGAAATCCCAGATCAATCCTATGCCACACATGGAAGTGGACAAATGGATTCAGCTGCCACCCCAGAAAACTCATCAATATCAATTGGAGATGATGATTTTGAGCAGAGTTCCCAAAAGTGTAAATCAGGAGGGGATGAATATGATGAAGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGTGAAAATGAGGGTATGTCAGCCCCTGGAAGTAGAACAGTGAGAGAACCTAGAGTTGTAGTTCAGACAACCAGTGACATTGATATCCTTGATGATGGCTATAGGTGGAGAAAATACGGGCAGAAAGTAGTGAAGGGCAATCCAAATCCAAGGTAA

>Glyma14g38010.1   sequence type=predicted peptide   gene model=Glyma14g38010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSGSLDTSASANSFTNFTFSTHPFMTTSFSDLLASPLDNNKPPQGGLSERTGSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVAQSFNWKSSSGGNQQIVKEEDKSFSNFSFQTRSGPPASSTATYQSSNVTVQTQQPWSFQEATKQDNFSSGKGMMKTENSSSMQSFSPEIASVQTNHSNGFQSDYGNYPPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSNSSSLAIPHSNSIRTEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEQSSQKCKSGGDEYDEDEPDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPMPNNASNHTNTAATSVRLLPVIHQSDNSLQNQRSQAPPEGQSPFTLEMLQSPGSFGFSGFGNPMQSYVNQQQLSDNVFSSRTKEEPRDDMFLESLLC*

>Glyma14g38010.2   sequence type=predicted peptide   gene model=Glyma14g38010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSGSLDTSASANSFTNFTFSTHPFMTTSFSDLLASPLDNNKPPQGGLSERTGSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVAQSFNWKSSSGGNQQIVKEEDKSFSNFSFQTRSGPPASSTATYQSSNVTVQTQQPWSFQEATKQDNFSSGKGMMKTENSSSMQSFSPEIASVQTNHSNGFQSDYGNYPPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSNSSSLAIPHSNSIRTEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEQSSQKCKSGGDEYDEDEPDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR*







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