Glyma14g37960 - SoyBase

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Report for Sequence Feature Glyma14g37960

Feature Type:	gene_model
Chromosome:	Gm14
Start:	47189224
stop:	47190551
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g37960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37260	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor family protein \| chr2:15645277-15646792 FORWARD LENGTH=429	SoyBase	E_val: 6.00E-19	ISS
GO:0001708	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell fate specification	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009957	GO-bp	Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification	SoyBase	N/A	ISS
GO:0010214	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed coat development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7IXC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7IXC7_MEDTR	SoyBase	E_val: 1.00E-140	ISS
UniRef100_I1MBG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBG9_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma14g37960

Locus	Gene Symbol	Protein Name
	WRKY148	WRKY Transcription Factor

Expression Patterns of Glyma14g37960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g37960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g199800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g37960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g37960

Limit To All Plant Sequences

>Glyma14g37960.1   sequence type=CDS   gene model=Glyma14g37960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTTCCGAAATTCCAATATGATAGTACAGAAAAAGCTATGGAGAATTGTTGGATTTTTGTCAAGTGTGATTGGACTAATCTGTTACGCGTTGAGTTCCTCTTTCAACCACCTATTTGGAGAGTGGAACTTCTTGAAGATCATCCTTTACGCAGTGATAAGTTTCTCTATCAGCAGCATCATGTTACTTTTGAAAAAATGGAAACTTTCCAAGAGTTTCATGCTAAAAGCTCATGTGGGTGTTCTGGTTTTGTTGATCACTTCTGTGTACTCTTTTGTATCCGACAAAGCTGTGAATGGAAAACCAGACATGTTAAGTTTGATTTCGTGTTTTGCCTTTGCTTTCATGTCTCTGTGTCTGTCAAAGCAGATTGACCTTGGGTTTGGAGCAGATCTCCTCAATTTCTTCCTTGGATGCCTAACTGTTCAACTAATGCACATCCATTTGATGCTCTCTATTGTTGCAGCCATATTTTGCTATTGTTTCATGTTTTTTCGTTCCAAGTTGGATTCTCAATCACAGATTGGAACTGTAGAAGTTGAAGACCATGTAAACATAGAAATTGATGCTGAAGATGGAAAAAGAGAGTTTGATGACAACAGAAGTGACTTCCAAGCTAATCATAGCCACCAACAAGTTCCGTTATTAAGAATGGTGGGTGATGGGTACAATTGGAGAAAATATGAAGATAAAGTAGTGAAAGGAAGTGCAAACCAGTTAAGTTACTACAAATGCACACAACCCACTTGCTATGTGAAGAAAAAAGTTGAGAGAACTATAGAGGGGGAAATTGTTGATATACACTACCAGGGTACTCATACACATTGCGAGCGTATGCATAATATGAAGAGAAACTCTTCATCTGAATATTTATATTCAGTGTTACCTTCAGAGCCTGTCACCTTTCCAGATCAATCATTTGCCTCTCAGGGCAATGGAGAATTGGATTATCATGTGCAGCAACAGAGAACTCCTCAATATCCAAATGAAATATGA

Predicted protein sequences of Glyma14g37960

Limit To All Plant Sequences

>Glyma14g37960.1   sequence type=predicted peptide   gene model=Glyma14g37960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPFRNSNMIVQKKLWRIVGFLSSVIGLICYALSSSFNHLFGEWNFLKIILYAVISFSISSIMLLLKKWKLSKSFMLKAHVGVLVLLITSVYSFVSDKAVNGKPDMLSLISCFAFAFMSLCLSKQIDLGFGADLLNFFLGCLTVQLMHIHLMLSIVAAIFCYCFMFFRSKLDSQSQIGTVEVEDHVNIEIDAEDGKREFDDNRSDFQANHSHQQVPLLRMVGDGYNWRKYEDKVVKGSANQLSYYKCTQPTCYVKKKVERTIEGEIVDIHYQGTHTHCERMHNMKRNSSSEYLYSVLPSEPVTFPDQSFASQGNGELDYHVQQQRTPQYPNEI*

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