SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07110 | AT | Annotation by Michelle Graham. TAIR10: fructose-2,6-bisphosphatase | chr1:2178363-2183980 REVERSE LENGTH=744 | SoyBase | E_val: 0 | ISS |
| GO:0006000 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fructose metabolic process | SoyBase | N/A | ISS |
| GO:0006002 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fructose 6-phosphate metabolic process | SoyBase | N/A | ISS |
| GO:0006003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fructose 2,6-bisphosphate metabolic process | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0042732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process | SoyBase | N/A | ISS |
| GO:0043609 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of carbon utilization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003873 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 6-phosphofructo-2-kinase activity | SoyBase | N/A | ISS |
| GO:0004331 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fructose-2,6-bisphosphate 2-phosphatase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| GO:2001070 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: starch binding | SoyBase | N/A | ISS |
| KOG0234 | KOG | Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase | JGI | ISS | |
| PTHR10606 | Panther | 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE | JGI | ISS | |
| PTHR10606:SF7 | Panther | FRUCTOSE-6-PHOSPHATE,2-KINASE/FRUCTOSE-2, 6-BISPHOSPHATASE | JGI | ISS | |
| PF00300 | PFAM | Phosphoglycerate mutase family | JGI | ISS | |
| PF01591 | PFAM | 6-phosphofructo-2-kinase | JGI | ISS | |
| UniRef100_Q93XR7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase n=1 Tax=Bruguiera gymnorhiza RepID=Q93XR7_BRUGY | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B3F9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B3F9 related cluster n=1 Tax=unknown RepID=UPI000233B3F9 | SoyBase | E_val: 0 | ISS |
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Glyma14g37522 not represented in the dataset |
Glyma14g37522 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g39390 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g195700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g37522.1 sequence type=CDS gene model=Glyma14g37522 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGGGAATAGTGAAGAAGACCGAGATGGCCTTCACCAATCGCCGTTACGAATCCCGGAATTGCTCTATGTTTCGGTGAAGATGGAGAATCCCAATCTCACTCTCTCTGGGGACCTTCTCCCTCACATATCTGGCTCTTGCCCTTCTGGGGATCCTTCCAAAGCTCTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTTCCACCTAATCACGAAGCTTTAGAGTTTAAGTTCCTTTTGAAGCCCAAGTACATCGATAATCCTTGTTTTGTTGAGGAGGGTCCAAGTCGAGTACTTATTGGGGGAGCATTGCAATATGGTGACAGGCTGGCTTTGTTTAGGCTTGATAATGATCAAGTTCTTGAGTATCGAGTATTTGTGGAAGCAAAAAGGGCTTCTCCCTTTGATCTTGCAGCTAGTTGGAGGGCTTATCAGGAGAATTTTCGTCTTTCAACTGTACGTGGGATACCTGATGTCAGCATAAATTCAGAAGTTCAGACAGGTAGTGAGAACATCTCATCTGTGAGTTTGGAACTTGATCTTGAGCATTATATTGTTCCATCTCCCCCAGTTTCTGCAAGTTCAGCACTTGTATATGCTGCTAACATGACTGAGAATCCCAGGTCACTAGATAGTGGGTTTGCCAGCATTTCGTCTTCTACTGTAGATGGTGGTGTTCCTATGATTGATCAACCAGAAACAGTAAAGTTTATGGAGGTTAATGCCCCTGATCCAGCTAAGGTGTACCAAAGTCCTGGAATGGTTAAATCTCAGTCAGCAGGAACCATTTTACCTCTGCAAAAGGAAGGTGATATGAGAGGACTTCTTGTTGATAGGGGTGTTGGAGTTCCCAGACTTGTAAAATCTTCTAGCTCATATGCTTTCACTACTAATCTTAATTTGTATACTGATACTAAGAATTCAATTCCAGCTGCTGCTGGAGCTGTTGCAGCTGCTGCGATTGCAGATCAGATGCTAGGTCCCAAGGAGCATAGACATTTGGCGATTGTCATGGTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGTATCGTCGCCTTAAGCATGGTTCTAGTCAGTCTGCTGATTTCTTTCGAGCTGACAATCCTGAAGGTGTGGAGGCACGTAATGAGGTAGCAAAGATGGCATTTGAAGATATGATATCTTGGATGCAAGAAGGTGGCCAGGTTGGGATATTTGATGCCACAAACAGTAGCAAGCAGCGAAGAAACATGCTGATGAAATTGGCTGAAGGTAGATGCAAGATCATTTTTCTGGAAACGATATGCAATGATGTTGACATAATTGAGAGGAATATACGCTTTAAAATTCAGCAGAGTCCCGACTATGCAGAAGTATCAGATTTTGAGGCTGGGTTGCGAGACTTTAAAGAACGTGTCGCCAATTATGAGAAGGTTTATGAGACCGTAGAAGAAGGATCTTACATAAAAATGATTGACATGGCCAGTGGACATGGAGGGCAAATACAAGTGAAAAATATCAGTGGCTACCTACCTGGCCGGATAGTATGTTTCTTGGTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAAGTCAGTATAATGTGAGAGGCAGAATTGGTGGAGACTCTGCATTAAGTGAGGCTGGAGAACTTTATAAAAAGAAGCTTGCCAAATTTGTTGAAAAGCGTCTCAAATCAGAACGAGCTGCATGTATATGGACTAGTACACTGCAGCGAACAATTTTGACAGCAGGTCCAATTGTTGGGTTTCCAAAGATACAATGGCGCGCACTTGATGAGATAAATGCCGGTGTGTGTGATGGGAAGACATATGAAGAAATCAAGAAGAACATGCCAGAGGAGTACGAATCCCGCAATAAGGACAAACTTAGGTATCGTTATCCTCGTGGAGAGTCTTACTTAGATGTTATTCAAAGGTTAGAACCTGTAATTATTGAGCTTGAGCGACAACGAGCACCTGTTGTTGTGATATCTCACCAGGCTGTTTTGAGGGCATTATATGCTTATTTTACTGACAGGCCTTTGAAAGAAATTGCAGATATTGAGATGCCCCTCCATACGATAATAGAGATACAATTGGGAGTTACTGGTGTTGAAGAGAAAAGATACAAACTAATGGACTGA
>Glyma14g37522.1 sequence type=predicted peptide gene model=Glyma14g37522 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGNSEEDRDGLHQSPLRIPELLYVSVKMENPNLTLSGDLLPHISGSCPSGDPSKALSMERESASVWELSFVVPPNHEALEFKFLLKPKYIDNPCFVEEGPSRVLIGGALQYGDRLALFRLDNDQVLEYRVFVEAKRASPFDLAASWRAYQENFRLSTVRGIPDVSINSEVQTGSENISSVSLELDLEHYIVPSPPVSASSALVYAANMTENPRSLDSGFASISSSTVDGGVPMIDQPETVKFMEVNAPDPAKVYQSPGMVKSQSAGTILPLQKEGDMRGLLVDRGVGVPRLVKSSSSYAFTTNLNLYTDTKNSIPAAAGAVAAAAIADQMLGPKEHRHLAIVMVSLPARGKTYTAAKLTRYLRWLGHNTKHFNVGKYRRLKHGSSQSADFFRADNPEGVEARNEVAKMAFEDMISWMQEGGQVGIFDATNSSKQRRNMLMKLAEGRCKIIFLETICNDVDIIERNIRFKIQQSPDYAEVSDFEAGLRDFKERVANYEKVYETVEEGSYIKMIDMASGHGGQIQVKNISGYLPGRIVCFLVNTHLTPRPILLTRHGESQYNVRGRIGGDSALSEAGELYKKKLAKFVEKRLKSERAACIWTSTLQRTILTAGPIVGFPKIQWRALDEINAGVCDGKTYEEIKKNMPEEYESRNKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFTDRPLKEIADIEMPLHTIIEIQLGVTGVEEKRYKLMD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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