SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58610 | AT | Annotation by Michelle Graham. TAIR10: PHD finger transcription factor, putative | chr5:23686771-23691053 REVERSE LENGTH=1065 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0042991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR10799 | Panther | ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED | JGI | ISS | |
| PTHR10799:SF64 | Panther | gb def: agcp7189 [anopheles gambiae str. pest] | JGI | ISS | |
| PF00628 | PFAM | PHD-finger | JGI | ISS | |
| UniRef100_G7JZJ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chromodomain helicase-DNA-binding protein n=1 Tax=Medicago truncatula RepID=G7JZJ8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JHE2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JHE2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g37420 not represented in the dataset |
Glyma14g37420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g39300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g194800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g37420.2 sequence type=CDS gene model=Glyma14g37420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGATCAAAAGTATCTCGTGGATGTGGTGCGTGTTTCAGCTATTTTGGATGGTCTTGGTTCTTCTTCAGATTGTAGCAATGAATGTGGATTCATTAGACCACTGCCTCCTCCGCTTGCATTTGGGGAGAGGGACCTTCCATTTGGTCTCTGTGTTGATGTGAATTATGAAGAAGCCTGGTGGGAAGGAGTTATATTTGATCACTGCAATGGAACGAAGGAGAGGAGTGTGCTCTTCCCGGATTTGGGTGATGAAATGAAGGTAGGAATTCATCATATGCGGCTAACTCAGGATTGGGATGAAGTTACTGAGAATTGGGAGTCGCGAGGGAAGTGGGTGTTCCTCGAGATGGTTGAGGAATGCGAGAAGGAATCGGTTGTTGCAGTCTCATTCAAGCAGATATGGTATGATGTGAGGGCAACAAAGGAGTTTGATGACAATATAAAGCACTGGACTTGTAATGTGAAGGAATTGTGGAGAGACCTTGTAAAAGAGGTGATTGGTAACTACTATGTTCTCACACTAGAACAAGTTTTCCCAGCCTTAAACCTTCCAGAGGATTTCTTCAAAGAAACACCAGAGTCAGTTGAACCTACTGACAGCATTCCCCTTCAAGAGGAATATGATAAAGATCCTTTGGTGGATGGGGCATCCGAGAAGGAAATTATTTTGCAGCAAGAACCAGCATCTCCAGTTCAAGAGATCATGCCTGAGGCTGGTGAAGTAATGCCAGGTGCTAGCTGTTGTGGAAAGAAGAGAAAACGTGGACGCTCAGCATCCATATATTGGGAGCCGCTGGTACTGACCAATGTTGAATTCTGTCCTGATGTTATTAACGAATATATACATGGATGTGGGAGCAAGACTGTTAGGGAACTTTTGAAGACTAAAGTAAGGAAACATCTTGCATATCTTGGATGGAAAATTGAGTGGGCTGAAGATAAATATTTTCCTGGGCGAGGACGCTACAGGTACAAGTCACCTGATGATGCACAGGAGCAGAAGGTTTACACTTCAATTATTCAAGTTTTGACACACATGCAAATGGAGTCCAACATGAACACTGTGCAGCCCCAAATTGATCACAATAGGATGCATTCTACAAATGACACTAATCTTTCACATCTGCTTTCAGATTTACCCCCAAACGACCAGGATGTAGATGTTTGTCCTCCTCCAAAACGGAAACCTTCTAATGTCAAAGTTGTAGTTGAGCCGGAATTTTGTCCTCAAGCTGTTGTTAAATATTACTTGAATGCATCAAACAAACATTGGGTTGATAGAGGAAAATGGAGACTGAAAGCAAAGAAGCATTTGTTAGCAGAAGGATGGACCTTTGACTACCCAACCAAGAAGCGAAAGACAACTTTGTACATATCTCCAGGAAATAAGTGGTTGGGCTTACTTCGAGGTGCATGCAGAATACACATTAAAGAAAAGATTTCTGAATGGACTAATTCTGGTATGATACCTTTGAATGTCCCAGCCATAAATGAGTCCGGTGAAGGTCATATTGATAGTGAGAACCTATTAAAAATTTTGTCCCAAACGCTTGAAAAAGAGTCTGAATTGCTAACTGCTTCACCAGCAAGTAGATCAACTGAGAATAGAAACCATAGATGCACCAGGAATTCAAAAGCTTCCATGCCAAAGAGCCACAGGAAAGGATTATCAACACGTGTGCTATGGTCACGCAAAAGGGTGCAGAAGGTGTCTGCCCCTAGTCCGTCACACCAAAGACCTCGAAATGTCTCATCTTGGTTGATTGATAACAGTGTGGTGATGTCAAGATGTAAGGTCTATTGCTGGGCAGAAGGAGGCAGGAACTCTAATGTGGTTGAGGGGAGGATAACTTATGATGGAATCAAGTGTAGCTGTTGCTTGAAAATATATGGTCTTGGTGGCTTTGTTAATCATGCTGGTGGAAGTAGTGACTGCAGGCCTTCTGCTAGTATCTTTTTGAAGGATGGTAGGTCAATCTTAGATTGCATGATAAAAGCAATGCATGATCATAGAACAAGGGAAGATATGAACAGACCGTGCAGTGATCTGTGTGAAGGAGAAAATGACAACATTTGTTCTGTCTGTCAATATGGCGGTGAACTTGTTTTGTGTGACCGATGTCCATCAGCATTTCATAGCGCGTGTCTTGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCTTGTCGTTGCGGGATTTGCAGACAAACCAAAATAGAAGGGACTGAGGATGGTGATTTACTTGCTTGCATTCAATGTGAACATAAATATCATGTTGAATGCTTGAAAGATAGAGAAAAATCTGAGTCAAGAAGATATATGAAAAATTGGCTGTGTGGAAAAGAGTGTGAACAGATATATGAAGGACTCCAAAGTCTATTAGGAAAGCCACTTATAGTGGGTGCGAACAATCTAACATGGACATTGGTGAAGTTTATCAACTCTGAGAGTTGTGATGTTGGTAGTACTAAGAATGACTTATTGGCAGAGAAATACAGCAAACTCAGTGTTGCCCTTTCGGTGATGCACGAGTGTTTTGAGCCATTAAAGAACCCTTTTACTAGTAAAGATATTATTGATGATGTTATATTCAACACTAGGTCAGACCTTAATAGATTGAATTTTGAGGGTTTCTACACTGTACTTCTGGAGCAAAATGAAGAATTGATAAGTGTAGCAACTATTAGGGTATTTGGACAGAAAGTAGCAGAGGTACCACTTGTAGGTACCAGAATACAATATCGTCGACTTGGAATGTGTCGAATTCTAATGGGTGAGCTTGAGAAGAGGCTCACACAACTTGGAGTGGAGAGGCTAGTCTTGCCTGCTGTTTCTGGAGTGCTAGAAACATGGACCAATTCTTTTGGTTTTGCAAAGATGACAAATTTTGAGAGGTCACAGTTCTTGGACTATGCTTTCCTAGATTTTCAGGAAACCATCATGTGCCAGAAGCTGTTAAAAAGGAGTTCATCCCCCGAATCGGTTTTAACAAGAGAGATGCAACCAAAACCACATGATGTTTTCACTGTCAAATGTAAAATTAAGTTTGAAAAGTCCAGTTCAGCACTTGAAGTGGACCAAGCTGAAGAGGCTCACAAAAGTAGGAAGGATCTACAAGTGGTGGAGTGTGTTCCAACTTTGCCTACTTCTTCCTAA
>Glyma14g37420.2 sequence type=predicted peptide gene model=Glyma14g37420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMDQKYLVDVVRVSAILDGLGSSSDCSNECGFIRPLPPPLAFGERDLPFGLCVDVNYEEAWWEGVIFDHCNGTKERSVLFPDLGDEMKVGIHHMRLTQDWDEVTENWESRGKWVFLEMVEECEKESVVAVSFKQIWYDVRATKEFDDNIKHWTCNVKELWRDLVKEVIGNYYVLTLEQVFPALNLPEDFFKETPESVEPTDSIPLQEEYDKDPLVDGASEKEIILQQEPASPVQEIMPEAGEVMPGASCCGKKRKRGRSASIYWEPLVLTNVEFCPDVINEYIHGCGSKTVRELLKTKVRKHLAYLGWKIEWAEDKYFPGRGRYRYKSPDDAQEQKVYTSIIQVLTHMQMESNMNTVQPQIDHNRMHSTNDTNLSHLLSDLPPNDQDVDVCPPPKRKPSNVKVVVEPEFCPQAVVKYYLNASNKHWVDRGKWRLKAKKHLLAEGWTFDYPTKKRKTTLYISPGNKWLGLLRGACRIHIKEKISEWTNSGMIPLNVPAINESGEGHIDSENLLKILSQTLEKESELLTASPASRSTENRNHRCTRNSKASMPKSHRKGLSTRVLWSRKRVQKVSAPSPSHQRPRNVSSWLIDNSVVMSRCKVYCWAEGGRNSNVVEGRITYDGIKCSCCLKIYGLGGFVNHAGGSSDCRPSASIFLKDGRSILDCMIKAMHDHRTREDMNRPCSDLCEGENDNICSVCQYGGELVLCDRCPSAFHSACLGLEDIPDGDWFCPSCRCGICRQTKIEGTEDGDLLACIQCEHKYHVECLKDREKSESRRYMKNWLCGKECEQIYEGLQSLLGKPLIVGANNLTWTLVKFINSESCDVGSTKNDLLAEKYSKLSVALSVMHECFEPLKNPFTSKDIIDDVIFNTRSDLNRLNFEGFYTVLLEQNEELISVATIRVFGQKVAEVPLVGTRIQYRRLGMCRILMGELEKRLTQLGVERLVLPAVSGVLETWTNSFGFAKMTNFERSQFLDYAFLDFQETIMCQKLLKRSSSPESVLTREMQPKPHDVFTVKCKIKFEKSSSALEVDQAEEAHKSRKDLQVVECVPTLPTSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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