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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G04240 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:1461816-1462304 REVERSE LENGTH=162 | SoyBase | E_val: 3.00E-58 | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid metabolic process | SoyBase | N/A | ISS |
| GO:0009739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR22937 | Panther | RING FINGER CONTAINING PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_C6SVI3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVI3_SOYBN | SoyBase | E_val: 4.00E-106 | ISS |
| UniRef100_G7J8T2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL4K n=1 Tax=Medicago truncatula RepID=G7J8T2_MEDTR | SoyBase | E_val: 2.00E-72 | ISS |
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Glyma14g36920 not represented in the dataset |
Glyma14g36920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g38860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g190300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g36920.3 sequence type=transcript gene model=Glyma14g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTATCTATAAAGCAAAGAGAGAAGAAATTACGGATTTTCCATCATTCCAGAACCGTAATCTCCAAACCCCACTTCGTTGACATCTTGACATTGCAATCCTGCCTTTTGGTTCCCCATTTCCATGTTTGTGGATTCTTCCTGATTCAAAGGCAATATATTGTGTCTTCATAGCTCAGTTTTTGAGCCTCATCAGTTGCAACTTGCAACACAAACTTTATCTATAACTTGGTATCTCTAAAGGACTCTCAGCATTGATCAAAATGGGCCTCTCTAGTCTCCCAGCACCATCTGAAGGAGTATTATGTGTCCTTCTGGTGAACACTGTATTGTCAATTTCCATATTCAAAGGCATTGTAAGGACAATCCTGCACATTGTTGGCATCCATCTTCCATCATCCTCCACTTCACCCTCTTCACCAGATCCCTCCCAAGCCGCACCTGAGTCATTTGAATTGCATCTTAGTCCCTCGGAGAGTTACATTGAAGAGTTCAGAAGCCGGACACCGACACTTCGGTTTGACAGTGTGTGCTGCTCTAAACGACTTGAACATGACTGCTCTGTATGCCTCACTCAGTTTGAACCCGAATCAGAGATAAACCGCTTATCGTGCGGTCATCTCTTCCACAAAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGCCCACTTTGCCGGACTCCCTTGATGCCCGAAGATGACACACCTTGCTTTCAGTAAGCAAAACAAGTGAGCATGCCAATAAGAGAGAGTTTCATGTACAGTGTAGTGTACATATTCTTGAGGGTTTTTGATGTTCATGCATCTGAGTTCTGCCACCTTTTTAAGTTTTAACCTTTTTGCCTTTTATGGTCTAGAGTTTGTGGAGGGTTTTGCTTTCCCTTCTTCTGTCTGTGCTCTTTAGCACAAATGAGGGGTATACTTTTTGCTTGCATGTTATGTTTGTTCACAATGCCCACCTTGTTTGGACCTCAGAGCCTTAATTCTATATTTGGGCATTTTGATCCTAATTTGGAAGCATGGATTGCAGAATCCATTTGTTTTGCCTTTCAAACTCTCCTCACCATGTATATATTGTGTGTAAATAGCTTTGGTTGCCACATAATAGAGTATATTTTGTTTAATTTATTTTTTACACCATTAAAAAAGTGTATAATGAGTATGTATTGAAAGAATGAAATAATTTTAGACTATTATTCAATT
>Glyma14g36920.2 sequence type=CDS gene model=Glyma14g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCCTCTCTAGTCTCCCAGCACCATCTGAAGGAGTATTATGTGTCCTTCTGGTGAACACTGTATTGTCAATTTCCATATTCAAAGGCATTGTAAGGACAATCCTGCACATTGTTGGCATCCATCTTCCATCATCCTCCACTTCACCCTCTTCACCAGATCCCTCCCAAGCCGCACCTGAGTCATTTGAATTGCATCTTAGTCCCTCGGAGAGTTACATTGAAGAGTTCAGAAGCCGGACACCGACACTTCGGTTTGACAGTGTGTGCTGCTCTAAACGACTTGAACATGACTGCTCTGTATGCCTCACTCAGTTTGAACCCGAATCAGAGATAAACCGCTTATCGTGCGGTCATCTCTTCCACAAAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGCCCACTTTGCCGGACTCCCTTGATGCCCGAAGATGACACACCTTGCTTTCAGTAA >Glyma14g36920.3 sequence type=CDS gene model=Glyma14g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCCTCTCTAGTCTCCCAGCACCATCTGAAGGAGTATTATGTGTCCTTCTGGTGAACACTGTATTGTCAATTTCCATATTCAAAGGCATTGTAAGGACAATCCTGCACATTGTTGGCATCCATCTTCCATCATCCTCCACTTCACCCTCTTCACCAGATCCCTCCCAAGCCGCACCTGAGTCATTTGAATTGCATCTTAGTCCCTCGGAGAGTTACATTGAAGAGTTCAGAAGCCGGACACCGACACTTCGGTTTGACAGTGTGTGCTGCTCTAAACGACTTGAACATGACTGCTCTGTATGCCTCACTCAGTTTGAACCCGAATCAGAGATAAACCGCTTATCGTGCGGTCATCTCTTCCACAAAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGCCCACTTTGCCGGACTCCCTTGATGCCCGAAGATGACACACCTTGCTTTCAGTAA
>Glyma14g36920.2 sequence type=predicted peptide gene model=Glyma14g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLPSSSTSPSSPDPSQAAPESFELHLSPSESYIEEFRSRTPTLRFDSVCCSKRLEHDCSVCLTQFEPESEINRLSCGHLFHKVCLEKWLDYWNITCPLCRTPLMPEDDTPCFQ* >Glyma14g36920.3 sequence type=predicted peptide gene model=Glyma14g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLPSSSTSPSSPDPSQAAPESFELHLSPSESYIEEFRSRTPTLRFDSVCCSKRLEHDCSVCLTQFEPESEINRLSCGHLFHKVCLEKWLDYWNITCPLCRTPLMPEDDTPCFQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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