Glyma14g36740 - SoyBase

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Report for Sequence Feature Glyma14g36740

Feature Type:	gene_model
Chromosome:	Gm14
Start:	46044506
stop:	46046667
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g36740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24620	AT	Annotation by Michelle Graham. TAIR10: Pathogenesis-related thaumatin superfamily protein \| chr5:8430918-8432289 FORWARD LENGTH=420	SoyBase	E_val: 5.00E-123	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PF00314	PFAM	Thaumatin family	JGI		ISS
UniRef100_G7K661	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thaumatin-like protein n=1 Tax=Medicago truncatula RepID=G7K661_MEDTR	SoyBase	E_val: 2.00E-159	ISS
UniRef100_I1MB60	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MB60_SOYBN	SoyBase	E_val: 1.00E-168	ISS

Expression Patterns of Glyma14g36740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g36740

Paralog	Evidence	Comments
Glyma02g38550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g36740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g188400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g36740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g36740

Limit To All Plant Sequences

>Glyma14g36740.2   sequence type=CDS   gene model=Glyma14g36740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTATAGTGATGACATCCTGGAAGTTCCCAAGCTTTCTAGCTATTTTGTTTACTTTGTTATCTTATTCTTTCTCTTCAATATTCACCATAACCAACAACTGCCCCCATACTATATGGCCCGGCACGCTCTCCGGCGCCGGCTCACCGCCACTTCCAACGACCGGGTTCCGGCTTGACTCGGGCCAAATGATCAAACTCACAAGTGTTCCAGGGTGGTCAGGAAGGATATGGGCTAGGACTGGCTGCACATTTGATGCAACAGGAATTGGTAAGTGCCAAACAGGTGATTGTGGTGGAAAGCTGGAATGTGATGGAAATGGTGCAGCTCCTCCCACCTCATTGTTTGAGATAACACTTGGTAAAGGCAATGATCAAGACTACTATGATGTCAGCATGGTTGATGGCTACAATCTGCCACTGCTTGCTCAACCAAGAGGTGTATATGGAACTGGTGTCTGTAATGCCACAGGTTGTGTCACTGACATCAATAGAGGTTGTCCAAAAGAACTTCAAGTAGTTGGTGGAGATGGATACCAAGGTGGTGTAGTTGGGTGTAAGAGTGCTTGTGAGGCATTTGGATCGGATCAGTACTGTTGCAGTGGAGAATTTGCCAATCCAACGACATGCCAGCCTTCCTATTATTCCACCCTTTTCAAGCAGGCTTGTCCAAAAGCCTATAGCTATGCATTTGATGATGCCACCAGCACTTTCATTTGCAAAGCTTTTGAATATGACATTGTTTTTTGTCCCAACGGCAATAAGGTTAAAAAACCAAATGGTGCATTTCCTCCACCACCACCATCAATTGAATGGCCTGATCAGAAGGTTCAGCAGCAGGTCCATTCTTCTTCAGATATTCTCTTACCCTGTCCAGTGACATTCTTTCTCTTTGTTGCCACTGTCTCTGTGCTTGCAGCAAAGACTCAGACACTGATATGA

Predicted protein sequences of Glyma14g36740

Limit To All Plant Sequences

>Glyma14g36740.2   sequence type=predicted peptide   gene model=Glyma14g36740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIVMTSWKFPSFLAILFTLLSYSFSSIFTITNNCPHTIWPGTLSGAGSPPLPTTGFRLDSGQMIKLTSVPGWSGRIWARTGCTFDATGIGKCQTGDCGGKLECDGNGAAPPTSLFEITLGKGNDQDYYDVSMVDGYNLPLLAQPRGVYGTGVCNATGCVTDINRGCPKELQVVGGDGYQGGVVGCKSACEAFGSDQYCCSGEFANPTTCQPSYYSTLFKQACPKAYSYAFDDATSTFICKAFEYDIVFCPNGNKVKKPNGAFPPPPPSIEWPDQKVQQQVHSSSDILLPCPVTFFLFVATVSVLAAKTQTLI*

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