Glyma14g36540 - SoyBase

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Report for Sequence Feature Glyma14g36540

Feature Type:	gene_model
Chromosome:	Gm14
Start:	45870384
stop:	45875489
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g36540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50850	AT	Annotation by Michelle Graham. TAIR10: Transketolase family protein \| chr5:20689671-20692976 FORWARD LENGTH=363	SoyBase	E_val: 0	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009060	GO-bp	Annotation by Michelle Graham. GO Biological Process: aerobic respiration	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004739	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate dehydrogenase (acetyl-transferring) activity	SoyBase	N/A	ISS
KOG0524	KOG	Pyruvate dehydrogenase E1, beta subunit	JGI		ISS
PTHR11624	Panther	DEHYDROGENASE RELATED	JGI		ISS
PTHR11624:SF11	Panther	PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNIT	JGI		ISS
PF02779	PFAM	Transketolase, pyrimidine binding domain	JGI		ISS
PF02780	PFAM	Transketolase, C-terminal domain	JGI		ISS
UniRef100_B7FJJ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Medicago truncatula RepID=B7FJJ4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_C6T827	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T827_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g36540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g36540 not represented in the dataset	Glyma14g36540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g36540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g186900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g36540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g36540

Limit To All Plant Sequences

>Glyma14g36540.4   sequence type=transcript   gene model=Glyma14g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGATATTTTTTTAAATTTTACTTAGACCCAAAGATATTTTTCAGATAATAAAAAGAGAAAAAGAATAAATAAAAGCGGAAGAGAGGGTAGGCTGTTACGGTTTGGTTTGGTGGTTATTTGATTGGTGTGCATCCATGTTAAGCTAGTGGCGATCGGATCCAGCTACAGCCTACAACCTACAGATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAGAGATTACTGTCAGGGATGCTCTCAACTCCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAGCATTCTCAATGTTATGCATCTTTGTATGGTTCATGCCCTGGGTTGAAAGTCTTGTCACCATATTCATCTGAAGATGCCCGTGGTTTGCTTAAAGCTGCTATTAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGGGAAGGAAAAGATGTGACTATTACAGCCTATTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTGCACATCTGTCATTGAAGAAAGTTTTGGTTATCTTGATGCACCCGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGAATGGCTGTCCCACAGGTTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCTACAGATCTGTGCCTTTGGCTGCATCTGCTTGAATGTTCTGGAAAATTTTCATGTCCTGGTTAGTTCTTTGCAGAAACAAAATTTTCCCTATTTTCCGCCACAAAACAGCAGGAAGAAATTGCAACCAAAGAATGCTGATTTTAACTCATTTATTATGTTAGGCTTTGGTTTAAAAGATTCTGTTGTATGCATAATACTGTCCTAATTTTCAGGACTCACAGATGCTATACATTTTTTCCCCTTCTCAGCATATCTGGGAGGAAGTTAATGTTAAATAACTTGTACAACAATGACACAAAGGCAGCAGGAAGTTTTCTGCGTTTTTGGTTTCTGCTTGGCAATAACTAAAAATCAACTTTTTGAATACATTATTTCCAGCGGACGATCACTTTACTGCAA

>Glyma14g36540.5   sequence type=transcript   gene model=Glyma14g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGATATTTTTTTAAATTTTACTTAGACCCAAAGATATTTTTCAGATAATAAAAAGAGAAAAAGAATAAATAAAAGCGGAAGAGAGGGTAGGCTGTTACGGTTTGGTTTGGTGGTTATTTGATTGGTGTGCATCCATGTTAAGCTAGTGGCGATCGGATCCAGCTACAGCCTACAACCTACAGTTTTGGTTTGGTTTGCTTGATTGAAGATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAGAGATTACTGTCAGGGATGCTCTCAACTCCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAGCATTCTCAATGTTATGCATCTTTGTATGGTTCATGCCCTGGGTTGAAAGTCTTGTCACCATATTCATCTGAAGATGCCCGTGGTTTGCTTAAAGCTGCTATTAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGGGAAGGAAAAGATGTGACTATTACAGCCTATTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTGCACATCTGTCATTGAAGAAAGTTTTGGTTATCTTGATGCACCCGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGAATGGCTGTCCCACAGGTTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCTACAGATCTGTGCCTTTGGCTGCATCTGCTTGAATGTTCTGGAAAATTTTCATGTCCTGGTTAGTTCTTTGCAGAAACAAAATTTTCCCTATTTTCCGCCACAAAACAGCAGGAAGAAATTGCAACCAAAGAATGCTGATTTTAACTCATTTATTATGTTAGGCTTTGGTTTAAAAGATTCTGTTGTATGCATAATACTGTCCTAATTTTCAGGACTCACAGATGCTATACATTTTTTCCCCTTCTCAGCATATCTGGGAGGAAGTTAATGTTAAATAACTTGTACAACAATGACACAAAGGCAGCAGGAAGTTTTCTGCGTTTTTGGTTTCTGCTTGGCAATAACTAAAAATCAACTTTTTGAATACATTATTTCCAGCGGACGATCACTTTACTGCAA

Coding sequences of Glyma14g36540

Limit To All Plant Sequences

>Glyma14g36540.1   sequence type=CDS   gene model=Glyma14g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTGTTATAAGGCACAAGAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAGAGATTACTGTCAGGGATGCTCTCAACTCCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAGCATTCTCAATGTTATGCATCTTTGTATGGTTCATGCCCTGGGTTGAAAGTCTTGTCACCATATTCATCTGAAGATGCCCGTGGTTTGCTTAAAGCTGCTATTAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGGGAAGGAAAAGATGTGACTATTACAGCCTATTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTGCACATCTGTCATTGAAGAAAGTTTTGGTTATCTTGATGCACCCGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGAATGGCTGTCCCACAGGTTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCTACAGATCTGTGCCTTTGGCTGCATCTGCTTGA

>Glyma14g36540.4   sequence type=CDS   gene model=Glyma14g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTGTTATAAGGCACAAGAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAGAGATTACTGTCAGGGATGCTCTCAACTCCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAGCATTCTCAATGTTATGCATCTTTGTATGGTTCATGCCCTGGGTTGAAAGTCTTGTCACCATATTCATCTGAAGATGCCCGTGGTTTGCTTAAAGCTGCTATTAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGGGAAGGAAAAGATGTGACTATTACAGCCTATTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTGCACATCTGTCATTGAAGAAAGTTTTGGTTATCTTGATGCACCCGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGAATGGCTGTCCCACAGGTTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCTACAGATCTGTGCCTTTGGCTGCATCTGCTTGA

>Glyma14g36540.5   sequence type=CDS   gene model=Glyma14g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTGTTATAAGGCACAAGAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAAGAGATTACTGTCAGGGATGCTCTCAACTCCGCACTCGATGAGGAAATGTCAGCTGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGGCAATAGATCATATTATTAACTCTGCCGCAAAATCAAACTACATGTCTGCTGGGCAAATATCTGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTGCTCAGCATTCTCAATGTTATGCATCTTTGTATGGTTCATGCCCTGGGTTGAAAGTCTTGTCACCATATTCATCTGAAGATGCCCGTGGTTTGCTTAAAGCTGCTATTAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGGGAAGGAAAAGATGTGACTATTACAGCCTATTCAAAAATGGTTGGCTATGCTCTCAAGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGCGTTGGCGCTGAAATCTGCACATCTGTCATTGAAGAAAGTTTTGGTTATCTTGATGCACCCGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGAATGGCTGTCCCACAGGTTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCTACAGATCTGTGCCTTTGGCTGCATCTGCTTGA

Predicted protein sequences of Glyma14g36540

Limit To All Plant Sequences

>Glyma14g36540.1   sequence type=predicted peptide   gene model=Glyma14g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGVIRHKSIRPAFSAIRHFSSAAKEITVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASLYGSCPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAYSKMVGYALKAAETLAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPLAASA*

>Glyma14g36540.4   sequence type=predicted peptide   gene model=Glyma14g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGVIRHKSIRPAFSAIRHFSSAAKEITVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASLYGSCPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAYSKMVGYALKAAETLAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPLAASA*

>Glyma14g36540.5   sequence type=predicted peptide   gene model=Glyma14g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGVIRHKSIRPAFSAIRHFSSAAKEITVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFAGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYASLYGSCPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAYSKMVGYALKAAETLAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPLAASA*

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