Glyma14g36190 - SoyBase

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Report for Sequence Feature Glyma14g36190

Feature Type:	gene_model
Chromosome:	Gm14
Start:	45403070
stop:	45407524
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g36190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24440	AT	Annotation by Michelle Graham. TAIR10: transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) \| chr4:12633460-12634553 FORWARD LENGTH=106	SoyBase	E_val: 4.00E-69	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0006367	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription initiation from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005672	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: transcription factor TFIIA complex	SoyBase	N/A	ISS
KOG3463	KOG	Transcription initiation factor IIA, gamma subunit	JGI		ISS
PTHR10966	Panther	TRANSCRIPTION INITIATION FACTOR IIA (TFIIA), GAMMA CHAIN	JGI		ISS
PF02268	PFAM	Transcription initiation factor IIA, gamma subunit, helical domain	JGI		ISS
PF02751	PFAM	Transcription initiation factor IIA, gamma subunit	JGI		ISS
UniRef100_I1MB16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor IIA subunit 2 n=1 Tax=Glycine max RepID=I1MB16_SOYBN	SoyBase	E_val: 6.00E-72	ISS
UniRef100_I1MB16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Transcription initiation factor IIA subunit 2 n=1 Tax=Glycine max RepID=I1MB16_SOYBN	SoyBase	E_val: 6.00E-72	ISS

Expression Patterns of Glyma14g36190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g36190 not represented in the dataset	Glyma14g36190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g36190

Paralog	Evidence	Comments
Glyma02g38030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g36190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g183100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g36190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g36190

Limit To All Plant Sequences

>Glyma14g36190.4   sequence type=transcript   gene model=Glyma14g36190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATCACGTGTCAAAAACGTGATCGAGGGTACGATAGTCATTGCGCACTGTTCTCCAACCTTCTCTATATATACCCCTCTCCTCCAAATTCTAGGGTATAAAAAGCCCCAAATTTCTCCAACGCTATCGAGCCAAACCCAAACGTTAACTCAGACGAAGCACCAACAGAAGAAGAAGAAACAAAACCGAACCTCTCTAAACTCTCCAACGTCGCCACCCGATTCGTAATTCGAATTCCACCCCTTAGATCTCCGTTTTTTGCTGCTTCTGTGCTTTCTCGCTTTCTCCGCAATCGCAATTATTTTTTCTATTATTACTTTCAATTCTCTGAATTCCTTCGAATTGTTTCGGTTCCGTTATCAACGCGTGCGTTTTGTTCGTCGCAGATCGCATTTCGCAGGCTGCAATGGCGACGTTCGAACTGTACCGCAGGTCGACGATTGGAATGTGCCTGACGGAGACGCTGGACGAGATGGTTCAGAACGGCACTCTAAGCCCCGAGCTCGCGATTCAGGTTCTGGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAAACGCAAGTTAAGAGTAAGGTCTCCATCAAGGGACATCTCCATACATATAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTCAAGAGCGAAGACAGCCAAGAGATTGTTGGACGGGTTAAAATAGTGGCGTGTGACTCGAAGTTGCTCACACAATAATGTGCCTAATTTCTGCCATTGTCGACAAGGACAAATTGTTGTCATCTGCTGGTACTATGGGAATGGTGGCCAGACCATAGTTAAAATGGTCTTAAATTCTTGCAGGAACTAGCAACTATTGTATGTTATTATTATAGATTTAAAAGCCATCAGTCTTCATATCATTAGGTAATTAATGCTACAATGAGAATACCGCTTGGAAATTGAATGAATCTACTCCCTTCTTTTAAGTGTATTTTGTTCTATTCTTCTGTGAGTACCAGTAAACTAGTTTATTTTTCACCGGCACAGGCCAGCTCCCTCACCTAACCCAACCAGTCTTTGCTGATTACATCGTAAATTCTGGAAAGTAATTTTAAGTAAGGTTACATCAATGAAAAAATATTACATGGGTGGTATGAGGAGTAGGGAG

Coding sequences of Glyma14g36190

Limit To All Plant Sequences

>Glyma14g36190.3   sequence type=CDS   gene model=Glyma14g36190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGTTCGAACTGTACCGCAGGTCGACGATTGGAATGTGCCTGACGGAGACGCTGGACGAGATGGTTCAGAACGGCACTCTAAGCCCCGAGCTCGCGATTCAGGTTCTGGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAAACGCAAGTTAAGAGTAAGGTCTCCATCAAGGGACATCTCCATACATATAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTCAAGAGCGAAGACAGCCAAGAGATTGTTGGACGGGTTAAAATAGTGGCGTGTGACTCGAAGTTGCTCACACAATAA

>Glyma14g36190.4   sequence type=CDS   gene model=Glyma14g36190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGTTCGAACTGTACCGCAGGTCGACGATTGGAATGTGCCTGACGGAGACGCTGGACGAGATGGTTCAGAACGGCACTCTAAGCCCCGAGCTCGCGATTCAGGTTCTGGTCCAGTTCGATAAGTCCATGACTGAGGCTCTGGAAACGCAAGTTAAGAGTAAGGTCTCCATCAAGGGACATCTCCATACATATAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTCAAGAGCGAAGACAGCCAAGAGATTGTTGGACGGGTTAAAATAGTGGCGTGTGACTCGAAGTTGCTCACACAATAA

Predicted protein sequences of Glyma14g36190

Limit To All Plant Sequences

>Glyma14g36190.3   sequence type=predicted peptide   gene model=Glyma14g36190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEDSQEIVGRVKIVACDSKLLTQ*

>Glyma14g36190.4   sequence type=predicted peptide   gene model=Glyma14g36190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEDSQEIVGRVKIVACDSKLLTQ*

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