Glyma14g35980 - SoyBase

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Report for Sequence Feature Glyma14g35980

Feature Type:	gene_model
Chromosome:	Gm14
Start:	45134593
stop:	45135363
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g35980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49700	AT	Annotation by Michelle Graham. TAIR10: Predicted AT-hook DNA-binding family protein \| chr5:20192599-20193429 FORWARD LENGTH=276	SoyBase	E_val: 7.00E-73	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_B9RJW1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RJW1_RICCO	SoyBase	E_val: 4.00E-79	ISS
UniRef100_I1MAZ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAZ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g35980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g35980

Paralog	Evidence	Comments
Glyma02g37680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g35980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g181200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g35980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g35980

Limit To All Plant Sequences

>Glyma14g35980.1   sequence type=CDS   gene model=Glyma14g35980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTCAAAGCTACACTCACAACACTCACAACAGCCTCAACCTTTTCAATTCTCTCGGGAATGTCAATCCTCTAAAGAGGATGATATCCCAAGCACTTGTGGTCTCAATTTGATCACCGCCCAAAAATCTGGTTTGAGCGGTGATCAAAATAATGAGACCACAAGTGAAATAATGCGGCGCCCTAGAGGACGCCCATCCGGTTCCAAAAACAGGCCCAAGCCGCCTCTCATAATAACGTGCGAGCCCGAGCCCGTCATGAGCCCGTTCATTCTAGAAATCCCGGGCGGAAGCGGCGTCGTTGAGGCCCTAGCCCGCTTCAGCCGCAGAAAGAACACCGGCCTTTGCGTTTTAACCGGTTCCGGAACCGTGGCCAACGTCACTCTCCGTCAACCTTCTTTCACTCCTGCCGGCGCCTCTGTCGCCACCGTCACTTTCCATGGCCGCTTCAATATCCTCTCCATGTCCGCCACCTTCCTCCACCACGGTTCTCCGGCGGCGATTCCGAACGCCCTCGCCGTGTCCCTTTCCGGACCGCAGGGGCAGATTGTCGGCGGACTCGTCGCCGGGAGGCTCCTCGCCGCGGGCACGGTGTTTGTGATTGCCGCGTCGTTCAACAACCCGTCGTATCACCGGCTTTCGTCGGAGGAGGACGCGCAGAACACCTCTGATGGCGGCGGAGACAGGCAGTCTCCGGCCGAGTCTAGTATGTACAGCTGCCACCGTCCTTCGGATGTGATTTGGGCTCCAACCCCTAGACCACCTTTCTGA

Predicted protein sequences of Glyma14g35980

Limit To All Plant Sequences

>Glyma14g35980.1   sequence type=predicted peptide   gene model=Glyma14g35980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSKLHSQHSQQPQPFQFSRECQSSKEDDIPSTCGLNLITAQKSGLSGDQNNETTSEIMRRPRGRPSGSKNRPKPPLIITCEPEPVMSPFILEIPGGSGVVEALARFSRRKNTGLCVLTGSGTVANVTLRQPSFTPAGASVATVTFHGRFNILSMSATFLHHGSPAAIPNALAVSLSGPQGQIVGGLVAGRLLAAGTVFVIAASFNNPSYHRLSSEEDAQNTSDGGGDRQSPAESSMYSCHRPSDVIWAPTPRPPF*

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