Glyma14g35881 - SoyBase

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Report for Sequence Feature Glyma14g35881

Feature Type:	gene_model
Chromosome:	Gm14
Start:	45055865
stop:	45057913
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g35881

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24620	AT	Annotation by Michelle Graham. TAIR10: phosphoglucose isomerase 1 \| chr4:12708972-12712610 REVERSE LENGTH=613	SoyBase	E_val: 2.00E-144	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004347	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate isomerase activity	SoyBase	N/A	ISS
PTHR11469	Panther	GLUCOSE-6-PHOSPHATE ISOMERASE	JGI		ISS
PF00342	PFAM	Phosphoglucose isomerase	JGI		ISS
UniRef100_I1JGY5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glucose-6-phosphate isomerase n=1 Tax=Glycine max RepID=I1JGY5_SOYBN	SoyBase	E_val: 9.00E-153	ISS
UniRef100_I1JGY5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate isomerase n=1 Tax=Glycine max RepID=I1JGY5_SOYBN	SoyBase	E_val: 9.00E-153	ISS

Expression Patterns of Glyma14g35881

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g35881 not represented in the dataset	Glyma14g35881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g35881

Paralog	Evidence	Comments
Glyma02g37590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g35881 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g180500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g35881

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g35881

Limit To All Plant Sequences

>Glyma14g35881.2   sequence type=transcript   gene model=Glyma14g35881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATCCTTCCGTATAAGGACAGCCTGCTATTATTTAGTAGATACTTGCAGCAGTTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATCGGGTTAATCAAGGAATTAGTGTCTATGGTAATAAAGGAAGCACAGATCAGCATGCCTACATTCAGCAACTGAGGGAAGGTGTGCATAATTTTTTTGTGACATTCATTGAGCAAGGTGTCACATGTGGCGACTACCTGTTTGGTATGCTACAGGGAACAAGGTCAGCCCTGTATGCCAATAACCGTGAATCCATCACTGTCACAGTGCAAGAAGTGACACCCAGATCAGTTGGTGCCCTTATAGCCCTTTATGAACGGGCAGTTGGAATATATGCCTCGCTTGTTAACATAAATGCTTATCACCAACCTGGTGTGGAAGCTGGTAAGAAAGCTGCAGGAGAAGTGTTAGCACTTCAGAAGCGGGTATTGGCAGTGCTAAATGAAGCAAGCTGCTAGGAGCCTGTCGAACCATTGACACTTGAAGAAGTAGCTGACCTTTGCCATGCCGCAGAAGATATTGAAATGATTTACAAGATCATTGCTCATATGGCTGCCAACGACAGAGCACTGATTGCTGAAGGTAACTGTGGTTCTCCGAGGAGCATCAAGGTTTTTCTTGGAGAGTGTAATCTTGATGAACTGTATGCTTGAGTTAGACTAATGAAATCCTCATTCCATAATGGTATAGATGTGTTTGTATACCCATCAAAAGAAAGGAAGC

Coding sequences of Glyma14g35881

Limit To All Plant Sequences

>Glyma14g35881.1   sequence type=CDS   gene model=Glyma14g35881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATCCTTCCGTATAAGGACAGCCTGCTATTATTTAGTAGATACTTGCAGCAGTTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATCGGGTTAATCAAGGAATTAGTGTCTATGGTAATAAAGGAAGCACAGATCAGCATGCCTACATTCAGCAACTGAGGGAAGGTGTGCATAATTTTTTTGTGACATTCATTGAGCAAGGTGTCACATGTGGCGACTACCTGTTTGGTATGCTACAGGGAACAAGGTCAGCCCTGTATGCCAATAACCGTGAATCCATCACTGTCACAGTGCAAGAAGTGACACCCAGATCAGTTGGTGCCCTTATAGCCCTTTATGAACGGGCAGTTGGAATATATGCCTCGCTTGTTAACATAAATGCTTATCACCAACCTGGTGTGGAAGCTGGTAAGAAAGCTGCAGGAGAAGTGTTAGCACTTCAGAAGCGGGTATTGGCAGTGCTAAATGAAGCAAGGTACAGTGAGCCTGTCGAACCATTGACACTTGAAGAAGTAGCTGACCTTTGCCATGCCGCAGAAGATATTGAAATGATTTACAAGATCATTGCTCATATGGCTGCCAACGACAGAGCACTGATTGCTGAAGGTAACTGTGGTTCTCCGAGGAGCATCAAGGTTTTTCTTGGAGAGTGTAATCTTGATGAACTGTATGCTTGA

>Glyma14g35881.2   sequence type=CDS   gene model=Glyma14g35881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATCCTTCCGTATAAGGACAGCCTGCTATTATTTAGTAGATACTTGCAGCAGTTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATCGGGTTAATCAAGGAATTAGTGTCTATGGTAATAAAGGAAGCACAGATCAGCATGCCTACATTCAGCAACTGAGGGAAGGTGTGCATAATTTTTTTGTGACATTCATTGAGCAAGGTGTCACATGTGGCGACTACCTGTTTGGTATGCTACAGGGAACAAGGTCAGCCCTGTATGCCAATAACCGTGAATCCATCACTGTCACAGTGCAAGAAGTGACACCCAGATCAGTTGGTGCCCTTATAGCCCTTTATGAACGGGCAGTTGGAATATATGCCTCGCTTGTTAACATAAATGCTTATCACCAACCTGGTGTGGAAGCTGGTAAGAAAGCTGCAGGAGAAGTGTTAGCACTTCAGAAGCGGGTATTGGCAGTGCTAAATGAAGCAAGCTGCTAG

Predicted protein sequences of Glyma14g35881

Limit To All Plant Sequences

>Glyma14g35881.1   sequence type=predicted peptide   gene model=Glyma14g35881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGISVYGNKGSTDQHAYIQQLREGVHNFFVTFIEQGVTCGDYLFGMLQGTRSALYANNRESITVTVQEVTPRSVGALIALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEARYSEPVEPLTLEEVADLCHAAEDIEMIYKIIAHMAANDRALIAEGNCGSPRSIKVFLGECNLDELYA*

>Glyma14g35881.2   sequence type=predicted peptide   gene model=Glyma14g35881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGISVYGNKGSTDQHAYIQQLREGVHNFFVTFIEQGVTCGDYLFGMLQGTRSALYANNRESITVTVQEVTPRSVGALIALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASC*

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