Glyma14g35790 - SoyBase

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Report for Sequence Feature Glyma14g35790

Feature Type:	gene_model
Chromosome:	Gm14
Start:	44933093
stop:	44934681
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g35790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02070	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:370445-370947 REVERSE LENGTH=131	SoyBase	E_val: 2.00E-12	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
UniRef100_I1MAY6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAY6_SOYBN	SoyBase	E_val: 3.00E-141	ISS
UniRef100_Q10QQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10QQ7_ORYSJ	SoyBase	E_val: 2.00E-14	ISS

Expression Patterns of Glyma14g35790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g35790

Paralog	Evidence	Comments
Glyma02g37500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g35790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g179800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g35790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g35790

Limit To All Plant Sequences

>Glyma14g35790.1   sequence type=CDS   gene model=Glyma14g35790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACCAAAGGAACAACTCACTCTAAACCCAACAACACTGAATGTTGCATGTGTGGGGATCTTGGCTTCTCTGATCAGCTTTTTCAATGCAAAGTCTGCCAATTCAGATCTCAACACAGATACTGCAGCAATCTCTACCCAAAGCCAGAGTCTCTTGGAACCTGCAATTGGTGTTTGAGTCAAAGAGAGGACACCAAAGAGAAGTCAACCAATTCATCAAACTCTTCCTCATCTATTAGGAACAATGATGATGAGAGGAGGTACAAGCGAATCAGGAATGGTAATAACAACAGTGCTCAAAATATTGGACCGGTGAAGAAGGAAGTGAAAGGGAGTGTTCTTCATCTCCAAATCCAGAAACCCATTAAGAAACCAAAGTCACCAGAGTCATCACGATCACCATCAGCATCCAATTCTCCACCGAAATCTTCGCTGGTTTTGGTATCGACCCGGAAGAGGATTGTCACCAATGGTGCCTTGGAAGAGAGACTGAGGAGGACTAGGTCAGAAAACATCACAAGAAGTGGTACCACAAAACAGGTCTTCAGGAATAAGGTGAGAAGGTACAAGCTTTTGGATGAAGTTTCTAGTTAA

Predicted protein sequences of Glyma14g35790

Limit To All Plant Sequences

>Glyma14g35790.1   sequence type=predicted peptide   gene model=Glyma14g35790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTKGTTHSKPNNTECCMCGDLGFSDQLFQCKVCQFRSQHRYCSNLYPKPESLGTCNWCLSQREDTKEKSTNSSNSSSSIRNNDDERRYKRIRNGNNNSAQNIGPVKKEVKGSVLHLQIQKPIKKPKSPESSRSPSASNSPPKSSLVLVSTRKRIVTNGALEERLRRTRSENITRSGTTKQVFRNKVRRYKLLDEVSS*

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