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Report for Sequence Feature Glyma14g35720

Feature Type:gene_model
Chromosome:Gm14
Start:44785604
stop:44788571
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24380AT Annotation by Michelle Graham. TAIR10: INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Oth SoyBaseE_val: 3.00E-114ISS
GO:0009257GO-bp Annotation by Michelle Graham. GO Biological Process: 10-formyltetrahydrofolate biosynthetic process SoyBaseN/AISS
GO:0009396GO-bp Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0015824GO-bp Annotation by Michelle Graham. GO Biological Process: proline transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
KOG2551 KOG Phospholipase/carboxyhydrolase JGI ISS
PTHR22778Panther OVARIAN CANCER GENE-2 PROTEIN-RELATED JGI ISS
PF03959PFAM Serine hydrolase (FSH1) JGI ISS
UniRef100_G7KBG3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, putative n=1 Tax=Medicago truncatula RepID=G7KBG3_MEDTR SoyBaseE_val: 5.00E-132ISS
UniRef100_I1MAY2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAY2_SOYBN SoyBaseE_val: 5.00E-158ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g35720 not represented in the dataset

Glyma14g35720 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g37450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g179200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g35720.2   sequence type=transcript   gene model=Glyma14g35720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCCAAAACAGTGGAGGAGGATGTCCACACGTTATTGAATTCAATTGAAGACACACGCAAAAATGGAAAACTAAGGAAAAAGGAAAAGAAAAGAAAAAAAAAGCAGTCTCTGACTCCTATAAATTGGTTTCACTGCCACCACAAAGTACAATATATACCTTCTAAACATTCTCTTGCACCCAAACCCTGGAATTAAGCACGTTATTTCATTAGGGTTGGTTTTGTTGAACAGAAAAAAAGAGAAAAAAAAATTATGGGAAGCGATGGCGTGAGGAAACCAAGATTCCTATGCCTTCATGGGTTCCGAACAAGCGGAGAAATATTGAAAACACAGTTACATAAGTGGCCTCAATCGGTTCTAGACAACCTCGATCTAGTATTTGTGGATGCTCCTTTTCCTTGCCTTGGCAAATCCGATGTAGAAGGCATTTTTGATCCCCCTTACTACGAGTGGTTTCAGTTCAACAAGGAATTTACAGAGTACACCAACTTTGACGAGTGCCTTCAGTACATTGAGGAATGCATGATCAAGTACGGACCTATTGATGGGCTTCTTGGTTTCTCACAGGGATCAATATTATCGGCTGCGCTGCCGGGTCTTCAGGAGAAGGGCGTGGCACTCACGAAGGTTCCGAAAGTGAAATTCCTAATAATAGTAGGAGGGGCAAAGTTTAGGTCACCTTCAGTGATGGACAAAGCATATTCTTCTTCCATTAGCTGTCCCTCCCTCCACTTTATAGGAGAGACAGATTTTTTGAACAAGTATGGGGCTGAACTACTAGAATCCTGTGTTGAACCCGTGGTGATTCACCACCCCAAAGGACACACAATACCAAGATTAGGTACGCTACTAAGTTACTATATATTTATCTTTGTTATCTATTTGTATTAATATGCAGGTGCTCAGATAGATTCTTATTTCATATTTTATTCATTTTTTATGAAAAAGAATGGTTTTGTGTTTGAGTTATTGATATGAATAGTTTTCTCTTTTCCTTTTCAGATGATAAGAGCTTGAAGACCATGATGGATTTCATCGAAAGAATTAAGAAAGATGTCTCAAAATAAGAAACGAGTTTAGACAACCAGCCAGTGCTTCAAAGGGATTTTTGAAATATTTATTCATTTTAACATAAATTAATAGCATTGCTATTTGTATTCTTATACAAATTTGTTACTGTTAGATCCTCAATGTAATCAATTATATAAGAGTCATATTTGAATATGTAAGCAGAGGCTCTCTGCCAAATTTGTGACAGCATTCACTTCCATCTTCCCAGATTCTTTTTTTTTTTTGGTTCATTAGTCAAAATTTATTCTTTGTGCACAACAACAAGGCTTTTGATATCCTAATAAATAGTTGATGACAAGTTATTCAAGTATTTGGTTTGGGATTTATTAAAACTTCAACATCTTTTTAATTTGGAAATTATGAAAATGACAAATTATTCAAG

>Glyma14g35720.1   sequence type=CDS   gene model=Glyma14g35720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCGATGGCGTGAGGAAACCAAGATTCCTATGCCTTCATGGGTTCCGAACAAGCGGAGAAATATTGAAAACACAGTTACATAAGTGGCCTCAATCGGTTCTAGACAACCTCGATCTAGTATTTGTGGATGCTCCTTTTCCTTGCCTTGGCAAATCCGATGTAGAAGGCATTTTTGATCCCCCTTACTACGAGTGGTTTCAGTTCAACAAGGAATTTACAGAGTACACCAACTTTGACGAGTGCCTTCAGTACATTGAGGAATGCATGATCAAGTACGGACCTATTGATGGGCTTCTTGGTTTCTCACAGGGATCAATATTATCGGCTGCGCTGCCGGGTCTTCAGGAGAAGGGCGTGGCACTCACGAAGGTTCCGAAAGTGAAATTCCTAATAATAGTAGGAGGGGCAAAGTTTAGGTCACCTTCAGTGATGGACAAAGCATATTCTTCTTCCATTAGCTGTCCCTCCCTCCACTTTATAGGAGAGACAGATTTTTTGAACAAGTATGGGGCTGAACTACTAGAATCCTGTGTTGAACCCGTGGTGATTCACCACCCCAAAGGACACACAATACCAAGATTAGATGATAAGAGCTTGAAGACCATGATGGATTTCATCGAAAGAATTAAGAAAGATGTCTCAAAATAA

>Glyma14g35720.2   sequence type=CDS   gene model=Glyma14g35720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCGATGGCGTGAGGAAACCAAGATTCCTATGCCTTCATGGGTTCCGAACAAGCGGAGAAATATTGAAAACACAGTTACATAAGTGGCCTCAATCGGTTCTAGACAACCTCGATCTAGTATTTGTGGATGCTCCTTTTCCTTGCCTTGGCAAATCCGATGTAGAAGGCATTTTTGATCCCCCTTACTACGAGTGGTTTCAGTTCAACAAGGAATTTACAGAGTACACCAACTTTGACGAGTGCCTTCAGTACATTGAGGAATGCATGATCAAGTACGGACCTATTGATGGGCTTCTTGGTTTCTCACAGGGATCAATATTATCGGCTGCGCTGCCGGGTCTTCAGGAGAAGGGCGTGGCACTCACGAAGGTTCCGAAAGTGAAATTCCTAATAATAGTAGGAGGGGCAAAGTTTAGGTCACCTTCAGTGATGGACAAAGCATATTCTTCTTCCATTAGCTGTCCCTCCCTCCACTTTATAGGAGAGACAGATTTTTTGAACAAGTATGGGGCTGAACTACTAGAATCCTGTGTTGAACCCGTGGTGATTCACCACCCCAAAGGACACACAATACCAAGATTAGGTACGCTACTAAGTTACTATATATTTATCTTTGTTATCTATTTGTATTAA

>Glyma14g35720.1   sequence type=predicted peptide   gene model=Glyma14g35720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSDGVRKPRFLCLHGFRTSGEILKTQLHKWPQSVLDNLDLVFVDAPFPCLGKSDVEGIFDPPYYEWFQFNKEFTEYTNFDECLQYIEECMIKYGPIDGLLGFSQGSILSAALPGLQEKGVALTKVPKVKFLIIVGGAKFRSPSVMDKAYSSSISCPSLHFIGETDFLNKYGAELLESCVEPVVIHHPKGHTIPRLDDKSLKTMMDFIERIKKDVSK*

>Glyma14g35720.2   sequence type=predicted peptide   gene model=Glyma14g35720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSDGVRKPRFLCLHGFRTSGEILKTQLHKWPQSVLDNLDLVFVDAPFPCLGKSDVEGIFDPPYYEWFQFNKEFTEYTNFDECLQYIEECMIKYGPIDGLLGFSQGSILSAALPGLQEKGVALTKVPKVKFLIIVGGAKFRSPSVMDKAYSSSISCPSLHFIGETDFLNKYGAELLESCVEPVVIHHPKGHTIPRLGTLLSYYIFIFVIYLY*







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