Report for Sequence Feature Glyma14g35580
Feature Type: gene_model
Chromosome: Gm14
Start: 44570135
stop: 44572126
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma14g35580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72200 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:27169935-27171149 REVERSE LENGTH=404
SoyBase E_val: 1.00E-57 ISS
GO:0006826 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron ion transport
SoyBase N/A ISS
GO:0010106 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation
SoyBase N/A ISS
GO:0010167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nitrate
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0015706 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate transport
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR22765 Panther
RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING
JGI ISS
PTHR22765:SF21 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_G7KAJ9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING finger-like protein n=1 Tax=Medicago truncatula RepID=G7KAJ9_MEDTR
SoyBase E_val: 4.00E-119 ISS
UniRef100_UPI000233BDF1 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233BDF1 related cluster n=1 Tax=unknown RepID=UPI000233BDF1
SoyBase E_val: 0 ISS
Expression Patterns of Glyma14g35580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma14g35580
Paralog Evidence Comments
Glyma02g37330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma14g35580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.14g178200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma14g35580
Coding sequences of Glyma14g35580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma14g35580.1 sequence type=CDS gene model=Glyma14g35580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCATGCAAAAGGAGAGTCCTCTTATTAGACTCCACAGTTTCGACCAAGGCCATGCATGGCTAGCTCTACTGCACCTTCTCATTCACATCTCACCGGCAGTAACCGGTCAGCCGGTAACCCCGCCGGTGCAACCCGACAGCAACAAATCCGTGATCGCCATCATGGCCATCGTGGTCATCATGTTCCTCATCTCAGCCTTCCTCTCCCTCTACTCCCGCAAGTGCTCCGACCGGCCGGTCCAGACACGTGGCATCCTCGACCTCGCGGGCCCCACGGGCGCAGCCGGTAACCCGTTGCAAGCCGAATCCAACGGCCTCAATCAAGCCACCATAGAAACGTTCCCAACTTTCCTCTACGCCGACGTGAAGGGTCTCAAGATTGGAAAAGACACGCTTGCATGCGCGGTGTGCTTGAACGAGTTCGAAGACAACGACACCCTCCGCATGATCCCCAAATGCTGCCACGTGTACCACCCCGATTGCATTGGTGCGTGGTTAGCCTCTCATTCCACGTGCCCGGTGTGTCGTGCCAACCTTGTTCCACAACCAGAAGACATGAACACGAACACGAACACGAACATGCCTTCAATCTTGTCCATTCAGATACCCAATGAAGAAGAACGTGAACATGAACATGAACATGAATACGAGGCTGTTATTGTTGGTGAGCAACATAAGAGAGATGTTGACGTGGAGTCACCGAAGGTGGATTTACTTCGGAGGATTCGAACGTTGCACCATGATCATCAGAGCCGTCCATCGAGGTCGAAGTCGACGGGGTTCTTGTCTTCGCTCTTGTTTCCGAGATCAAACTCGATGGGGCAATTGGCGCAGCATGCTGGGGAGAACTATGAGAGGTTTACGCTAAGGTTACCCGAGGAGGTACTACGGAGCCAGATGGTGCTGAAGCGTGCGAATAGCTGCGTGTGCTTTACGAGGATGAGTAGTGGCACGTGGGGGTATAGGACGAGAAGCGTGGGGAGAGGGTGTGTGCAGTACGAGAGGTTTGGTGGTGAGAATGAACAGTGGGGTTTCACTTTGACGCCGCCAAGTCTCGTTAGGAACAGTTGGAATAATAATAGATCAACGAGAAAATCACCGGTTCAGCGTTCGGGTGTGGCGTTGGATAATAATAATGCTGGTGAGAGATCCACTGAATTCTTGCGTCTTGGGTAG
Predicted protein sequences of Glyma14g35580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma14g35580.1 sequence type=predicted peptide gene model=Glyma14g35580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSMQKESPLIRLHSFDQGHAWLALLHLLIHISPAVTGQPVTPPVQPDSNKSVIAIMAIVVIMFLISAFLSLYSRKCSDRPVQTRGILDLAGPTGAAGNPLQAESNGLNQATIETFPTFLYADVKGLKIGKDTLACAVCLNEFEDNDTLRMIPKCCHVYHPDCIGAWLASHSTCPVCRANLVPQPEDMNTNTNTNMPSILSIQIPNEEEREHEHEHEYEAVIVGEQHKRDVDVESPKVDLLRRIRTLHHDHQSRPSRSKSTGFLSSLLFPRSNSMGQLAQHAGENYERFTLRLPEEVLRSQMVLKRANSCVCFTRMSSGTWGYRTRSVGRGCVQYERFGGENEQWGFTLTPPSLVRNSWNNNRSTRKSPVQRSGVALDNNNAGERSTEFLRLG*