Glyma14g35550 - SoyBase

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Report for Sequence Feature Glyma14g35550

Feature Type:	gene_model
Chromosome:	Gm14
Start:	44513945
stop:	44515537
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g35550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72220	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:27184388-27185629 REVERSE LENGTH=413	SoyBase	E_val: 2.00E-63	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF30	Panther	OS02G0692000 PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7KAJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1O n=1 Tax=Medicago truncatula RepID=G7KAJ2_MEDTR	SoyBase	E_val: 2.00E-130	ISS
UniRef100_I1MAX0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAX0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g35550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g35550

Paralog	Evidence	Comments
Glyma02g37296	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g35550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g177900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g35550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g35550

Limit To All Plant Sequences

>Glyma14g35550.2   sequence type=transcript   gene model=Glyma14g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAATCCAAACAAAATCCACCTCACGCTTAACCCCATTCTTCATTTCCTCTCTCTGTCCACTTGTGTCCGTAAAAGTTTCTTCATAAAACACACACTCCAAATGGCTAGCAAACACAGAAAACTCTTCCCTGATGAAACAGCAACCACAAACCAAACCCAAGATTGCTATGGCTTTTGTGACCCAGCATGCCCTTACAATTGTTACAATAACCCTGATTACTTTTTCTCTCCTCCACCACCACCACCACCTTCTATTTCACATTCAAGCCAAGTTAACCATATATCTTCCTACTTTATCATTCTTGTTACACTATTCACGGTCATTTTTGTTGTGGTTGGTTTCTACGTGATCAAGGTGAAGTGCTATGCTACATGGTGCGGCTGGCGATTCAGCGGTTCCGTTCCCTCTTCAGACACCACCACTGAGGAGTTTCTCAATGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACTGTGGGGTTGCAAGAATCGATCATCAACTCCATCACGGTTTGCAAGTACAAGAAGAATGAAGGGTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTTCAAGAAGAGGAGACATTACGACTCTTGCCAAAGTGCAACCATGCTTTTCACGTTCCTTGTATTGACACTTGGTTGAGATCACACACAAATTGCCCTCTTTGTCGTGCCGGTATTGTTTCTAATAGTGTCAATTCTGAAGCACCAGCACCCGTGTCGAATTCGGAGCAAGAAAATGCAAATTTGGGGAGGAATCAAGATACCCTTTTGGACAATTCACGGATTAATGAAGGTGGGTTAAGCAGCAACATGGTTGCTGGGGAATCAAGTGAAGCAATAGATGAATCAAATTCTAAGGATCGGGTAAATGATGAAACTCAGAACAATGGGGTTCTGATGAATATTGAGATTCAAACAGAGATGGGGTCTGTTTCAACTACAGAATGTGAAAGTCATCGTGTTGTTGATGATCATAAACATGATGATGACACAATGTTGCACACGGATAATCTAGGGAAGCAAGATCAAGATGGTGATTACTACTACTCAAAAACGTGTAAAACAGTGCGTCGTTCCTCTATTGAAGAGTGTTTGCATTTAAGCCCAGTATCTATGAAAAGGTCATTCTCCTCTTGCAATGGAAGGACTCTAACTTCGAGAGAATTTTGAGGGCACCCTAGGTTGGAGTTTGAACATTGACAATGGTATAAACAGCAAATTGTGAAAGAGAAAAGAGGTCAATTTTAATGAAGAATAAAATGTAAAATTGTAATTGAAGTTTTACCAAGTGCTCGGGCATTGAAAATAACTCTGGTGTATCATGTATGCAATTGTATCACACATCACAATGCCCAGTGTTGCACTGCAGAACAGGTTTGCTCCCACAAAAGGGAATAAGGTACATTAAATGCTCTATTTTTTGCTATATATATATATATATATATATATATATATATATA

Coding sequences of Glyma14g35550

Limit To All Plant Sequences

>Glyma14g35550.1   sequence type=CDS   gene model=Glyma14g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGCAAACACAGAAAACTCTTCCCTGATGAAACAGCAACCACAAACCAAACCCAAGATTGCTATGGCTTTTGTGACCCAGCATGCCCTTACAATTGTTACAATAACCCTGATTACTTTTTCTCTCCTCCACCACCACCACCACCTTCTATTTCACATTCAAGCCAAGTTAACCATATATCTTCCTACTTTATCATTCTTGTTACACTATTCACGGTCATTTTTGTTGTGGTTGGTTTCTACGTGATCAAGGTGAAGTGCTATGCTACATGGTGCGGCTGGCGATTCAGCGGTTCCGTTCCCTCTTCAGACACCACCACTGAGGAGTTTCTCAATGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACTGTGGGGTTGCAAGAATCGATCATCAACTCCATCACGGTTTGCAAGTACAAGAAGAATGAAGGGTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTTCAAGAAGAGGAGACATTACGACTCTTGCCAAAGTGCAACCATGCTTTTCACGTTCCTTGTATTGACACTTGGTTGAGATCACACACAAATTGCCCTCTTTGTCGTGCCGGTATTGTTTCTAATAGTGTCAATTCTGAAGCACCAGCACCCGTGTCGAATTCGGAGCAAGAAAATGCAAATTTGGGGAGGAATCAAGATACCCTTTTGGACAATTCACGGATTAATGAAGGTGGGTTAAGCAGCAACATGGTTGCTGGGGAATCAAGTGAAGCAATAGATGAATCAAATTCTAAGGATCGGGTAAATGATGAAACTCAGAACAATGGGGTTCTGATGAATATTGAGATTCAAACAGAGATGGGGTCTGTTTCAACTACAGAATGTGAAAGTCATCGTGTTGTTGATGATCATAAACATGATGATGACACAATGTTGCACACGGATAATCTAGGGAAGCAAGATCAAGATGGTGATTACTACTACTCAAAAACGTGTAAAACAGTGCGTCGTTCCTCTATTGAAGAGTGTTTGCATTTAAGCCCAGTATCTATGAAAAGGTCATTCTCCTCTTGCAATGGAAGGACTCTAACTTCGAGAGGTTACATGAGTCTAAACTCTAAACTCAATTCATCCCTACTAGAGTTCTCATTTTATGAAAGATGA

>Glyma14g35550.2   sequence type=CDS   gene model=Glyma14g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGCAAACACAGAAAACTCTTCCCTGATGAAACAGCAACCACAAACCAAACCCAAGATTGCTATGGCTTTTGTGACCCAGCATGCCCTTACAATTGTTACAATAACCCTGATTACTTTTTCTCTCCTCCACCACCACCACCACCTTCTATTTCACATTCAAGCCAAGTTAACCATATATCTTCCTACTTTATCATTCTTGTTACACTATTCACGGTCATTTTTGTTGTGGTTGGTTTCTACGTGATCAAGGTGAAGTGCTATGCTACATGGTGCGGCTGGCGATTCAGCGGTTCCGTTCCCTCTTCAGACACCACCACTGAGGAGTTTCTCAATGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACTGTGGGGTTGCAAGAATCGATCATCAACTCCATCACGGTTTGCAAGTACAAGAAGAATGAAGGGTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTTCAAGAAGAGGAGACATTACGACTCTTGCCAAAGTGCAACCATGCTTTTCACGTTCCTTGTATTGACACTTGGTTGAGATCACACACAAATTGCCCTCTTTGTCGTGCCGGTATTGTTTCTAATAGTGTCAATTCTGAAGCACCAGCACCCGTGTCGAATTCGGAGCAAGAAAATGCAAATTTGGGGAGGAATCAAGATACCCTTTTGGACAATTCACGGATTAATGAAGGTGGGTTAAGCAGCAACATGGTTGCTGGGGAATCAAGTGAAGCAATAGATGAATCAAATTCTAAGGATCGGGTAAATGATGAAACTCAGAACAATGGGGTTCTGATGAATATTGAGATTCAAACAGAGATGGGGTCTGTTTCAACTACAGAATGTGAAAGTCATCGTGTTGTTGATGATCATAAACATGATGATGACACAATGTTGCACACGGATAATCTAGGGAAGCAAGATCAAGATGGTGATTACTACTACTCAAAAACGTGTAAAACAGTGCGTCGTTCCTCTATTGAAGAGTGTTTGCATTTAAGCCCAGTATCTATGAAAAGGTCATTCTCCTCTTGCAATGGAAGGACTCTAACTTCGAGAGAATTTTGA

Predicted protein sequences of Glyma14g35550

Limit To All Plant Sequences

>Glyma14g35550.1   sequence type=predicted peptide   gene model=Glyma14g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKHRKLFPDETATTNQTQDCYGFCDPACPYNCYNNPDYFFSPPPPPPPSISHSSQVNHISSYFIILVTLFTVIFVVVGFYVIKVKCYATWCGWRFSGSVPSSDTTTEEFLNENQVDHPVWLIATVGLQESIINSITVCKYKKNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHVPCIDTWLRSHTNCPLCRAGIVSNSVNSEAPAPVSNSEQENANLGRNQDTLLDNSRINEGGLSSNMVAGESSEAIDESNSKDRVNDETQNNGVLMNIEIQTEMGSVSTTECESHRVVDDHKHDDDTMLHTDNLGKQDQDGDYYYSKTCKTVRRSSIEECLHLSPVSMKRSFSSCNGRTLTSRGYMSLNSKLNSSLLEFSFYER*

>Glyma14g35550.2   sequence type=predicted peptide   gene model=Glyma14g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKHRKLFPDETATTNQTQDCYGFCDPACPYNCYNNPDYFFSPPPPPPPSISHSSQVNHISSYFIILVTLFTVIFVVVGFYVIKVKCYATWCGWRFSGSVPSSDTTTEEFLNENQVDHPVWLIATVGLQESIINSITVCKYKKNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHVPCIDTWLRSHTNCPLCRAGIVSNSVNSEAPAPVSNSEQENANLGRNQDTLLDNSRINEGGLSSNMVAGESSEAIDESNSKDRVNDETQNNGVLMNIEIQTEMGSVSTTECESHRVVDDHKHDDDTMLHTDNLGKQDQDGDYYYSKTCKTVRRSSIEECLHLSPVSMKRSFSSCNGRTLTSREF*

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