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Report for Sequence Feature Glyma14g35430

Feature Type:gene_model
Chromosome:Gm14
Start:44396994
stop:44401334
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G22450AT Annotation by Michelle Graham. TAIR10: cytochrome C oxidase 6B | chr1:7925447-7926918 FORWARD LENGTH=191 SoyBaseE_val: 3.00E-59ISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0004129GO-mf Annotation by Michelle Graham. GO Molecular Function: cytochrome-c oxidase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
KOG3057 KOG Cytochrome c oxidase, subunit VIb/COX12 JGI ISS
PTHR11387Panther CYTOCHROME C OXIDASE POLYPEPTIDE VIB JGI ISS
PF02297PFAM Cytochrome oxidase c subunit VIb JGI ISS
UniRef100_G7KAG6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Subunit 6b of cytochrome c oxidase n=1 Tax=Medicago truncatula RepID=G7KAG6_MEDTR SoyBaseE_val: 2.00E-82ISS
UniRef100_I1MAW4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAW4_SOYBN SoyBaseE_val: 9.00E-122ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g35430 not represented in the dataset

Glyma14g35430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g37150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g177100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g35430.1   sequence type=CDS   gene model=Glyma14g35430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAACTGCTGTCGACAAATCCCAATCTCTCGCTGAGGAATATTATGTGAAGGATAAGCAAACAGCTGTAGTTGAAAAACCTGTTGAGGTCAAAGAAGTTGAAAACCCAGAGGAGGCTGCTTCTGAGGAACCCGTTGCTGAGAAAACTGTGGAAGAAACAACTCCTGTTGCCCCTGCAGTTGCTCAGGAAAGCAGTGAAGTCACCCCTCCTCCTGCTGAAGAAAGCACTGAAGAGCAAAGTAGTGGAAATGTTGAAGAAAACTCTGGCAATGAAGATGCAGCTGAAGAGACCCCTGAAATTAAGCTTGAAACTGCTCCAGCAGATTTCCGTTTTCCAACTACAAATCAAACCAGGCATTGCTTTACCCGATACGTTGAATATCATCGATGCGTAGCTGCCAAGGGAGAAGGTGCACCAGAATGTGACAAGTTTGCCAAATATTATCGTTCTCTTTGCCCTGGTGAATGGATTGACAGATGGAACGAGCAAAGGGAGAATGGAACATTCCCAGGCCCGCTGTAG

>Glyma14g35430.1   sequence type=predicted peptide   gene model=Glyma14g35430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETAVDKSQSLAEEYYVKDKQTAVVEKPVEVKEVENPEEAASEEPVAEKTVEETTPVAPAVAQESSEVTPPPAEESTEEQSSGNVEENSGNEDAAEETPEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEGAPECDKFAKYYRSLCPGEWIDRWNEQRENGTFPGPL*







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