Glyma14g35340 - SoyBase

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Report for Sequence Feature Glyma14g35340

Feature Type:	gene_model
Chromosome:	Gm14
Start:	44234277
stop:	44235627
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g35340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08950	AT	Annotation by Michelle Graham. TAIR10: Phosphate-responsive 1 family protein \| chr4:5740378-5741322 FORWARD LENGTH=314	SoyBase	E_val: 2.00E-146	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04674	PFAM	Phosphate-induced protein 1 conserved region	JGI		ISS
UniRef100_I1MAV9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAV9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O82161	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phi-1 protein n=1 Tax=Nicotiana tabacum RepID=O82161_TOBAC	SoyBase	E_val: 8.00E-154	ISS

Expression Patterns of Glyma14g35340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g35340

Paralog	Evidence	Comments
Glyma02g37060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g35340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g176400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g35340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g35340

Limit To All Plant Sequences

>Glyma14g35340.1   sequence type=CDS   gene model=Glyma14g35340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCCTCTCCTACATCTCCAAGAGTTCTCTTCTTGAGTCTCTTTGTAACTCTTTCCATGATTTTACATTTGAGTTCAGCCAGGAAGTTGTCTGAGTCAGACCCCCAATTGCAGTTCCAATACCACAGAGGCCCTCTCCTCACAGGCAAAATCTCCGTAAACCTAATTTGGTACGGTAAGTTCAAACCTTCTCAGAAAGCCATTGTTGCTGATTTCATCACCTCTCTCTCCTCTTCCAAACCCCTCACCGCCCAACCATCCGTTGCCACGTGGTGGAAAGCCACCGACAAATACTACAAAAACTCGTTCCCCAAACTTGCACTCTCCCTAGGGTCCCAAATCGTTGATGAAAACTACTCTCTAGGAAAATCACTCACCACCAACCAAATCTTAAAACTCGCGTCCAAGGGTCCACAGAGAAACGCCATCAACATCGTTCTAACTTCTGCTGAAGTGGCAGTGGAGGGGTTCTGTTCGAGTAGGTGCGGAACACACGGGTCCTCCGTGGGGGCGCGTGTGAACGGTAAGAGGTATAAGTTCGCCTACATGTGGGTGGGTAACTCAGAGACACAGTGCCCTGGTCAATGCGCGTGGCCGTTCCACCAACCCATTTACGGTCCCCAGAACCCAGCACCTTTGGTTGCACCCAACAACGACGTGGGTCTCGACGGCATGGTTATCAACGTGGCTAGTCTTCTTGCTGGGACTGTCACTAACCCTTTTGGAAATGGCTACTTTCAAGGACCCAAAGAAGCTCCTTTGGAAGCTGGTTCGGCTTGCACTGGGGTTTATGGTAAGGGCGCGTATCCTGGCTATGCAGGGAATCTCTTGGTGGACCCCACCACCGGTGCCAGTTACAACGCGAATGGGGTCAACGGAAGGAAGTATCTGTTGCCAGCTCTTGTTGATCCTAAAACCTCATCTTGTTCCACGCTCGTGTAA

Predicted protein sequences of Glyma14g35340

Limit To All Plant Sequences

>Glyma14g35340.1   sequence type=predicted peptide   gene model=Glyma14g35340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMASPTSPRVLFLSLFVTLSMILHLSSARKLSESDPQLQFQYHRGPLLTGKISVNLIWYGKFKPSQKAIVADFITSLSSSKPLTAQPSVATWWKATDKYYKNSFPKLALSLGSQIVDENYSLGKSLTTNQILKLASKGPQRNAINIVLTSAEVAVEGFCSSRCGTHGSSVGARVNGKRYKFAYMWVGNSETQCPGQCAWPFHQPIYGPQNPAPLVAPNNDVGLDGMVINVASLLAGTVTNPFGNGYFQGPKEAPLEAGSACTGVYGKGAYPGYAGNLLVDPTTGASYNANGVNGRKYLLPALVDPKTSSCSTLV*

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